External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM782.HVML.355 Homo sapiens	—	h5ad 93.1 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM465.STNV.844 Homo sapiens	—	h5ad 93.1 MB	Not in ASAP	Details
geo sc	Single cell LARRY state-fate analysis of Npm1cA/Flt3-ITD acute myeloid leukem... GSE318348 Mus musculus	—	mtx 93.6 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing (scRNA-seq) of murine hematopoietic stem and proge... GSE326120 Mus musculus	—	h5ad 93.7 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::0e99f1f8-f954-4378-bd26-808d820c6f1d Homo sapiens	—	h5 94.3 MB	Not in ASAP	Details
geo sc	Single-cell RNA-seq analysis of PDX (Patient-Derived Xenograft) tumors isolat... GSE290685 Mus musculus	—	mtx 95.1 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::9de199f3-6b1b-574b-9d2a-f1779b9673a6 Homo sapiens	—	mtx 95.8 MB	Not in ASAP	Details
hca sc	Single-cell RNA-seq of human peripheral blood NKT cells Publication DOI f48e7c39-cc67-4055-9d79-bc437892840c::fd652e28-2f71-5654-bd2a-3f8702e0e1e8 Homo sapiens	—	loom 96.4 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::82731968-fece-4f42-987d-30d94190d0af Homo sapiens	—	mtx 96.6 MB	Not in ASAP	Details
geo sc	Rational design of immune gene therapy combinations via in vivo CRISPR activa... GSE317950 Mus musculus	—	rds 96.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::9dcd80ac-5127-4f58-af05-1ad5601d467a Homo sapiens	—	h5 96.9 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::5070cf9a-5d71-4348-85a1-dc3d134a8e24 Homo sapiens	—	h5 96.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white male HBM842.TBXT.532 Homo sapiens	—	h5ad 97.1 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::2c9b5204-be35-427c-8aac-87a2c6cd3e97 Homo sapiens	—	h5 97.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 37-year-old white male HBM692.MHPM.997 Homo sapiens	—	h5ad 98.7 MB	Not in ASAP	Details
geo sc	Single-cell transcriptomics reveals markers of regulatory T cell dysfunction ... GSE280975 Homo sapiens	—	mtx 98.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::3724e7bd-5588-43c5-a1a6-ab5a6e5de25f Homo sapiens	—	h5 98.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::4a9a6a9a-3cf6-4af6-94cc-dae1f2134a76 Homo sapiens	—	h5 98.9 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::c0ca89e6-04f5-5af9-8096-0bd58e6c89af Homo sapiens	—	loom 99.1 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white male HBM298.XPFQ.827 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM823.CNRW.484 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM745.HTBD.332 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 67-year-old white female HBM593.JLCT.283 Homo sapiens	—	h5ad 100 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM892.JLFV.844 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM344.QRJX.878 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details