External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM479.GMDK.586 Homo sapiens	—	h5ad 116 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM696.FGSV.776 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 20-year-old unknown male HBM767.CHDG.359 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM688.GVRR.228 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 56-year-old black or african... HBM324.XBMF.465 Homo sapiens	—	h5ad 119 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::c3bc3fd8-5a01-41f5-a265-7a11696cb949 Homo sapiens	—	mtx 120 MB	Not in ASAP	Details
geo sc	RNA sequencing data of leptomeningeal/perivascular CAMs 8 weeks after repopul... GSE295335 Mus musculus	—	rds 120 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old black or africa... HBM752.KZCK.589 Homo sapiens	—	h5ad 120 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::92cee92e-7651-4df5-aa65-ff3dee8fa589 Homo sapiens	—	h5 121 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::bba307b9-b158-439f-94bb-630d1f08530b Homo sapiens	—	mtx 121 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 25-year-old white male HBM262.LMHQ.472 Homo sapiens	—	h5ad 121 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::9074432b-4f62-54c4-bcf5-3bf336dc4624 Homo sapiens	—	loom 121 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::cc7c546b-5e51-42ed-98c5-9c5de07e8e43 Homo sapiens	—	h5 122 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::a1aa1778-e497-5144-8571-c67041a98ee5 Homo sapiens	—	loom 122 MB	Not in ASAP	Details
hca sc	Distinct microbial and immune niches of the human colon Publication DOI 83f5188e-3bf7-4956-9544-cea4f8997756::57d5bbbf-5c27-5c0c-a32f-46ca08a58650 Homo sapiens	—	loom 122 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 28-year-old black or africa... HBM874.JPGB.398 Homo sapiens	—	h5ad 123 MB	Not in ASAP	Details
geo sc	Single cell gene expression profile of kdrl+ zebrafish cells at 48 hours post... GSE275515 Danio rerio	—	rds 124 MB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::11f8ba42-a556-5757-a0f4-38863bf371c7 Mus musculus	—	loom 124 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::4a618385-cad9-4e88-b988-e227af0b6073 Homo sapiens	—	h5 124 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM673.GSSW.364 Homo sapiens	—	h5ad 124 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM247.BVLS.599 Homo sapiens	—	h5ad 125 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 37-year-old white male HBM867.NVKS.443 Homo sapiens	—	h5ad 126 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM722.TVXP.469 Homo sapiens	—	h5ad 127 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM842.DDTX.473 Homo sapiens	—	h5ad 127 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::3b2b3372-3228-4436-a422-683f1080d226 Homo sapiens	—	h5ad 127 MB	Not in ASAP	Details