External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::c4c7a609-d1d9-434d-8e03-2b800e65ea09 Homo sapiens	—	h5ad 127 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::a8c0345b-e6b3-550b-9f53-7d515d71eaf6 Homo sapiens	—	loom 127 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::a393e7ab-34ed-4f38-b73e-6e3ff03dd859 Homo sapiens	—	h5ad 128 MB	Not in ASAP	Details
broad_scp sc	dropMe SCP3304	—	h5ad 128 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 50-year-old white female HBM455.RZPH.997 Homo sapiens	—	h5ad 128 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::899e6e63-300e-4c65-b6b7-360d332aaf7e Homo sapiens	—	h5 129 MB	Not in ASAP	Details
geo sc	The cell states of sea urchin during metamorphosis revealed by single-cell RN... GSE329994 Heliocidaris crassispina	—	rds 129 MB	Not in ASAP	Details
geo sc	CITE-seq profiling of human splenic dendritic cells GSE313153 Homo sapiens	—	rds 130 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM947.GLGL.465 Homo sapiens	—	h5ad 130 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM334.DWWF.436 Homo sapiens	—	h5ad 130 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM468.SSXX.967 Homo sapiens	—	h5ad 131 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM744.FNLN.846 Homo sapiens	—	h5ad 132 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::773d29a6-9cf9-5dfc-80b5-bb48bf8adf1b Homo sapiens	—	loom 132 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::3a3cf957-0c9e-46f0-999d-5cff25a485e8 Homo sapiens	—	h5 132 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 37-year-old white male HBM868.CXJM.449 Homo sapiens	—	h5ad 133 MB	Not in ASAP	Details
geo sc	scRNAseq Dataset of lungs from WT and Clec1a KO mice following primary or sec... GSE326909 Mus musculus	—	mtx 134 MB	Not in ASAP	Details
broad_scp sc	HCA LungMAP integrated lung dataset SCP1257	—	h5ad 135 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 65-year-old white male HBM699.XBTD.684 Homo sapiens	—	h5ad 136 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::2ba7c90b-0c5b-49ec-896f-16ef1efbabd6 Homo sapiens	—	h5 137 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM265.FQWZ.384 Homo sapiens	—	h5ad 137 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM749.MTJC.865 Homo sapiens	—	h5ad 137 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::62e2316b-7f2b-4f37-ae4c-563ded9194c8 Homo sapiens	—	h5 138 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 67-year-old white male HBM522.FTFK.487 Homo sapiens	—	h5ad 138 MB	Not in ASAP	Details
hca sc	Salivary ZG16B expression loss follows exocrine gland dysfunction related to ... Publication DOI 60109425-a6e6-4be1-a3bc-15de680317d4::5656c52f-d2f2-4102-9ac7-8ddbd520b245 Homo sapiens	—	h5 138 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 75-year-old white female HBM793.JDRF.289 Homo sapiens	—	h5ad 139 MB	Not in ASAP	Details