External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM293.NNSQ.773 Homo sapiens	—	h5ad 148 MB	Not in ASAP	Details
geo sc	scRNA-seq of murine oropharyngeal carcinoma GSE318632 Mus musculus	—	mtx 148 MB	Not in ASAP	Details
geo sc	CITE-Seq analysis of intratumoral immune cells from YUMM1.7 melanoma treated ... GSE292038 Mus musculus	—	mtx 149 MB	Not in ASAP	Details
geo sc	Systematic Benchmarking of Ambient RNA decontamination Tools to Advance Preci... GSE337237 Mus musculus	—	mtx 149 MB	Not in ASAP	Details
hca sc	Single cell sequencing identifies novel sub-populations of breast cancer cell... Publication DOI f6133d2a-9f3d-4ef9-9c19-c23d6c7e6cc0::8b771e65-9a72-5e8c-ad42-3c52831c503e Homo sapiens	—	loom 149 MB	Not in ASAP	Details
geo sc	A beneficial environment promotes immune resilience through epigenetic regula... GSE307573 Mus musculus	—	rds 150 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::54be9d91-5f36-4b93-8809-df1bd49f47e8 Homo sapiens	—	h5ad 151 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::f5da72ac-411d-4513-a009-f3fe4e2f05c0 Homo sapiens	—	h5 151 MB	Not in ASAP	Details
geo sc	Single Cell Glycome and Transcriptome Profiling Enabled by a Library of Anti-... GSE298512 Homo sapiens	—	mtx 151 MB	Not in ASAP	Details
geo sc	Single Cell RNA Sequencing Unveils Distinct Cellular Dynamics in Celiac Disea... GSE315138 Homo sapiens	—	mtx 151 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 20-year-old unknown male HBM575.GRHR.768 Homo sapiens	—	h5ad 152 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::32cb8d2e-618c-51ff-92e8-8a3b85ccc05c Homo sapiens	—	loom 154 MB	Not in ASAP	Details
geo sc	Clinical and Single-Cell Sequencing Characteristics of Adult-Onset Intestinal... GSE338463 Homo sapiens	—	mtx 154 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 21-year-old black or african americ... HBM232.MLHJ.832 Homo sapiens	—	h5ad 154 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::cd403303-f270-42e3-86c6-2d0a2e87cff0 Homo sapiens	—	h5ad 155 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::25a055f4-c7f0-4084-bd68-74f1220b945e Homo sapiens	—	mtx 156 MB	Not in ASAP	Details
hca sc	Dissecting the clonal nature of allelic expression in somatic cells by single... Publication DOI ccef38d7-aa92-4010-9621-c4c7b1182647::bb8b075a-f7c3-5b7c-af94-5fba927a2418 Mus musculus	—	loom 157 MB	Not in ASAP	Details
geo sc	Mapping the unicellular transcriptome of the ascending thoracic aorta to chan... GSE334220 Mus musculus	—	mtx 157 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM373.HCFG.722 Homo sapiens	—	h5ad 157 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::3c8866b2-5f6b-4d96-ab40-f921ab276d4b Homo sapiens	—	h5 157 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341293 Mus musculus	—	rds 161 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 24-year-old unknown male HBM856.HVWM.567 Homo sapiens	—	h5ad 162 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::2e159435-1614-4cef-88ea-01b8b048a085 Homo sapiens	—	h5 164 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (left) of a 56-year-old white male HBM695.PDWX.296 Homo sapiens	—	h5ad 164 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the heart of a 61-year-old white male HBM893.JVLB.845 Homo sapiens	—	h5ad 165 MB	Not in ASAP	Details