External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM236.KSJH.889 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM449.QGGL.994 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM456.GRCM.369 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM475.FWNZ.942 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::9b25edd5-662f-48ed-93a2-f1665aa50b2f Homo sapiens	—	mtx 181 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::ce35ff5a-1607-400a-a677-a7fe019dc1a0 Homo sapiens	—	h5 181 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::70966e1a-501f-4fb3-ad58-538ed1d7a92c Homo sapiens	—	h5ad 182 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 31-year-old black or african ... HBM627.CMWM.636 Homo sapiens	—	h5ad 183 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM629.GSHG.922 Homo sapiens	—	h5ad 183 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::a7f9b821-a2e4-49d1-adeb-200f549cb38d Homo sapiens	—	h5 183 MB	Not in ASAP	Details
hca sc	Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI 07073c12-8006-4710-a00b-23abdb814904::d31a421e-2e59-5888-9914-67e1798030a2 Homo sapiens	—	loom 184 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in s... Publication DOI 457d0bfe-79e4-43f1-be5d-83bf080d809e::d676751e-c3d8-4d8e-92b5-4cdc14926bc2 Homo sapiens	—	h5 184 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::6ca2166b-bc1d-51b4-9eb3-6836784b0232 Homo sapiens	—	loom 187 MB	Not in ASAP	Details
geo sc	Microbiome-produced nicotinic acid controls colon regional identity and injur... GSE311538 Mus musculus	—	mtx 187 MB	Not in ASAP	Details
hca sc	Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation. Publication DOI 67a3de09-45b9-49c3-a068-ff4665daa50e::e17ad464-787e-5526-8b5d-f2fcea28cb06 Homo sapiens	—	loom 187 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::a7ce0474-d29c-445e-a4d7-6d0b56ec543d Homo sapiens	—	h5ad 187 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f58f1e35-ec0b-4f68-a32d-e061ff4bba2c Homo sapiens	—	h5 188 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::b965ae8a-2f38-4061-b67e-1ed7699485e6 Homo sapiens	—	h5ad 189 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::6523769c-84e4-5abc-8a66-517a5ebf95e2 Homo sapiens	—	loom 190 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::71680c1e-3fa1-513c-a261-81d09be29b57 Homo sapiens	—	loom 190 MB	Not in ASAP	Details
geo sc	Single-cell RNA-seq of femoral bone cells reveals cellular heterogeneity and ... GSE304165 Mus musculus	—	rds 192 MB	Not in ASAP	Details
broad_scp sc	Computational reconstruction for imaging-free spatial transcriptomics SCP2577	—	h5ad 192 MB	Not in ASAP	Details
geo sc	Gene expression data at the single cell level of human hamstring, deltoid, su... GSE227548 Homo sapiens	—	mtx 193 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::73a2bc0c-ab05-40f4-b596-b7c9f71f543a Homo sapiens	—	h5ad 193 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::b5225c28-9e9f-597b-8016-175ae315eced Homo sapiens	—	loom 194 MB	Not in ASAP	Details