External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::894eb9e5-e6c2-4b2f-9d69-e5e9d0269c32 Homo sapiens	—	h5ad 194 MB	Not in ASAP	Details
geo sc	R-loop landscapes in the developing human brain are linked to neural differen... GSE327314 Homo sapiens	—	mtx 195 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::11190ebd-af03-5559-b156-faad3023ea14 Homo sapiens	—	loom 195 MB	Not in ASAP	Details
geo sc	Immunological Differences in Atopic Dermatitis Across Age Groups: Insights fr... GSE332623 Homo sapiens	—	mtx 196 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::00fa7d5e-5686-4b26-a92f-625078d365d2 Homo sapiens	—	h5 196 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::fb9b3006-df88-5e59-a773-ccacffa6724c Homo sapiens	—	mtx 198 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::e40c99fe-9c7c-56b9-b2d9-0f038ed6a3f2 Homo sapiens	—	mtx 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM879.SGNW.944 Homo sapiens	—	h5ad 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 20-year-old white male HBM795.TFHS.265 Homo sapiens	—	h5ad 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM975.MVDK.648 Homo sapiens	—	h5ad 199 MB	Not in ASAP	Details
hca sc	Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition. Publication DOI e5d45579-1f5b-48c3-b568-320d93e7ca72::b3944d37-cdcb-5a6a-bb41-f39e7c657bc3 Mus musculus	—	loom 201 MB	Not in ASAP	Details
geo sc	Pan-cancer single-cell atlas of mouse and human tumor-associated dendritic cells GSE304727 Mus musculus	—	rds 202 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::e4194216-b71c-48cf-b2ec-5a6befa55554 Homo sapiens	—	h5ad 204 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::3bab147f-4df5-5d3f-be16-37a1f5f3f3df Homo sapiens	—	mtx 205 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM437.LCSH.956 Homo sapiens	—	h5ad 205 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM339.FPMK.994 Homo sapiens	—	h5ad 205 MB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::1a64614d-c95b-55bd-8830-62c6958c564e Homo sapiens	—	loom 207 MB	Not in ASAP	Details
geo sc	Age-dependent CNS responses to Powassan virus infection revealed by single-ce... GSE329199 Mus musculus	—	rds 207 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 49-year-old white male HBM837.KRCD.342 Homo sapiens	—	h5ad 207 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341390 Mus musculus	—	rds 207 MB	Not in ASAP	Details
hca sc	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI 42d4f8d4-5422-4b78-adae-e7c3c2ef511c::95356471-fd1c-5a85-86a2-fab70cdbbb2d Mus musculus	—	loom 208 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::eb1ea814-5f55-4a33-ba5e-2f540cad9e82 Homo sapiens	—	h5 208 MB	Not in ASAP	Details
geo sc	Spatiotemporal transcriptomics characterizes immune microenvironment during m... GSE327303 Mus musculus	—	rds 208 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::2f97068d-7e3f-491f-a93b-b1f32e65775b Homo sapiens	—	h5ad 209 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::d65a9976-f431-4cd4-b05a-a3616058f66b Homo sapiens	—	h5ad 209 MB	Not in ASAP	Details