External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM938.GBST.823 Homo sapiens	—	h5ad 248 MB	Not in ASAP	Details
geo sc	Single-cell resolution drug effects on renin-angiotensin-aldosterone blockade... GSE233078 Rattus norvegicus	—	rds 248 MB	Not in ASAP	Details
geo sc	scRNA-seq of bone marrow and splenic emergency granulopoiesis GSE317310 Mus musculus	—	mtx 250 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::2d43e41d-0b79-4862-9160-83407f0cb0bd Homo sapiens	—	h5ad 251 MB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::59dd465a-05dd-5150-ae8e-68badf88d596 Homo sapiens	—	h5ad 252 MB	Not in ASAP	Details
geo sc	Establishment of Human Formative Pluripotent Stem Cell Like Cells Exhibiting ... GSE298430 Homo sapiens	—	mtx 253 MB	Not in ASAP	Details
geo sc	Longitudinal single-cell transcriptomic profiling of human breast milk and pa... GSE335791 Homo sapiens	—	rds 256 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 10-year-old white male HBM323.BVBV.658 Homo sapiens	—	h5ad 256 MB	Not in ASAP	Details
hca sc	A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI 842605c7-375a-47c5-9e2c-a71c2c00fcad::3c8ad112-2dca-57cb-a752-01ad1e605453 Homo sapiens	—	loom 256 MB	Not in ASAP	Details
hca sc	Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI f83165c5-e2ea-4d15-a5cf-33f3550bffde::2b775bb1-5f7a-5a7a-ac68-488c9b35cf8a Homo sapiens	—	loom 257 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::01637394-a041-4233-9ad1-f56dcd2be3fd Homo sapiens	—	h5ad 257 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::978e9e89-1daf-4aa8-9411-d2c92bed6bec Homo sapiens	—	h5 259 MB	Not in ASAP	Details
geo sc	Distinct tissue niches contribute to prostate TRM cell differentiation and he... GSE296277 Mus musculus	—	h5ad 261 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 27-year-old white female HBM825.VPHH.585 Homo sapiens	—	h5ad 261 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM937.TWRN.355 Homo sapiens	—	h5ad 263 MB	Not in ASAP	Details
geo sc	Easy-Multiome enables joint profiling of gene expression and chromatin access... GSE338572 Zea mays	—	rds 263 MB	Not in ASAP	Details
geo sc	Sympathetic Neurons Restrain Pancreatic Cancer Lung Metastatic seeding throug... GSE334205 Mus musculus	—	mtx 265 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old white male HBM493.DHZJ.845 Homo sapiens	—	h5ad 265 MB	Not in ASAP	Details
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::e08d2b7a-c3c7-4e85-9f31-7835ea482d87 Homo sapiens	—	h5ad 266 MB	Not in ASAP	Details
hca sc	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI f8aa201c-4ff1-45a4-890e-840d63459ca2::5fa57481-d620-5eb3-955f-6f0aea93025b Homo sapiens	—	loom 266 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI 559bb888-7829-41f2-ace5-2c05c7eb81e9::b6eccfda-98dd-5c62-a345-6e4693c29113 Homo sapiens	—	h5 269 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM292.GSZL.269 Homo sapiens	—	h5ad 269 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::2edf9616-d6c1-4124-8397-b9d80b0e8292 Homo sapiens	—	mtx 270 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f2801dfc-aaa2-4789-88a8-c63e2ebb16c2 Homo sapiens	—	h5 271 MB	Not in ASAP	Details
geo sc	Charting Postnatal Heart Development Using In Vivo Single-Cell Functional Gen... GSE290986 Mus musculus	—	mtx 273 MB	Not in ASAP	Details