External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	MYCN sustains a progenitor-stage differentiation block in human neuroepitheli... GSE338545 Homo sapiens	—	rds 274 MB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::ec8fcbf6-8556-5820-af81-1d0b346e6038 Homo sapiens	—	loom 276 MB	Not in ASAP	Details
hca sc	Single cell RNA-sequencing of human tonsil Innate lymphoid cells (ILCs) Publication DOI 520afa10-f9d2-4e93-ab7a-26c4c863ce18::6dcc3ab8-784e-5650-b500-16cc12fed239 Homo sapiens	—	loom 280 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::37430547-9289-45c0-ac7e-98382a1e8bab Homo sapiens	—	h5 280 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI 559bb888-7829-41f2-ace5-2c05c7eb81e9::8fbd3d96-dcdf-5c58-b9b5-44b3e0e5db0b Homo sapiens	—	loom 282 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::2484e2cc-cbff-42be-9fb8-4c4056c01792 Homo sapiens	—	mtx 284 MB	Not in ASAP	Details
geo sc	Gene expression profile of nociceptors innervating the skin at a single cell ... GSE278171 Mus musculus	—	rds 287 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old white male HBM482.JGJX.834 Homo sapiens	—	h5ad 288 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::687273b5-7d8c-4b5a-8c49-e2441bd83168 Homo sapiens	—	h5 288 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::1d8a4488-3c4c-52b1-9912-52f08da57022 Homo sapiens	—	loom 288 MB	Not in ASAP	Details
geo sc	A single-cell atlas exposes the transcriptional complexity of algal life cycl... GSE303315 Cylindrotheca closterium	—	rds 290 MB	Not in ASAP	Details
geo sc	Single-cell transcriptional patterns impairment in an adult neurogenesis mode... GSE307094 Homo sapiens	—	mtx 290 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 31-year-old black or african ... HBM237.QHSL.933 Homo sapiens	—	h5ad 290 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM979.VMDC.365 Homo sapiens	—	h5ad 291 MB	Not in ASAP	Details
hca sc	The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Publication DOI 7be05025-9972-493a-856f-3342a8d1b183::74e668ef-f883-48e9-8a3a-31591e3a3e69 Mus musculus	—	mtx 294 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM948.GXMD.986 Homo sapiens	—	h5ad 294 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::ccde81d1-7ab7-56da-aa8d-0b99f92418c5 Homo sapiens	—	loom 294 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::61bd419f-2215-471d-a2c5-198b75308737 Homo sapiens	—	h5 295 MB	Not in ASAP	Details
geo sc	Multimodal single cell profiling identifies nclTECs and links chromatin remod... GSE318155 Homo sapiens	—	rds 295 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 43-year-old white male HBM446.TBPT.898 Homo sapiens	—	h5ad 295 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old black or africa... HBM299.VDWT.444 Homo sapiens	—	h5ad 295 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM688.RPFC.258 Homo sapiens	—	h5ad 296 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM436.XFFT.833 Homo sapiens	—	h5ad 296 MB	Not in ASAP	Details
geo sc	Single-cell transcriptional analysis of human pluripotent stem cell-derived h... GSE309829 Homo sapiens	—	rds 298 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::7625f862-b9b6-4c6f-96f3-6a28c8b60274 Homo sapiens	—	h5 299 MB	Not in ASAP	Details