External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Single-nucleus RNA sequencing and spatial transcriptomics decode cell type-sp... d5c91e92-2e7f-473d-8cf3-ab03bbae21c2::862de225-ca93-4acc-9601-cef928c9ac18 Homo sapiens	—	h5ad 300 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 37-year-old unknown male HBM455.HBZX.789 Homo sapiens	—	h5ad 304 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::3d926686-ceac-4368-a6d6-edaced9ee9b9 Homo sapiens	—	h5ad 305 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::a5ae7f2e-81ff-472e-919c-787ed120923b Homo sapiens	—	h5 305 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 25-year-old white female HBM898.XQTL.438 Homo sapiens	—	h5ad 305 MB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::8464fdc4-9927-56d7-a244-08a4a0de16c9 Homo sapiens	—	loom 308 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::25ae11b3-8dcf-5752-8056-54761127b143 Homo sapiens	—	loom 309 MB	Not in ASAP	Details
hca sc	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Ce... Publication DOI b4a7d12f-6c2f-40a3-9e35-9756997857e3::2b5d16c3-f2db-5764-947e-bdf1c7bf4f68 Mus musculus	—	loom 312 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA sequencing reveals the pathological process and key transc... GSE336870 Mus musculus	—	mtx 313 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::d456d763-64dd-5350-ac0f-22a3f07c31a7 Homo sapiens	—	loom 314 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 18-year-old white male HBM469.ZSKB.898 Homo sapiens	—	h5ad 315 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 22-year-old black or african ameri... HBM683.PNGX.923 Homo sapiens	—	h5ad 316 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white male HBM264.MJCH.639 Homo sapiens	—	h5ad 317 MB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::d6103ed2-2e5b-5047-a8a9-fefa0d7f62e1 Homo sapiens	—	loom 318 MB	Not in ASAP	Details
broad_scp sc	A single cell atlas of the cycling murine ovary SCP1914	—	rds 318 MB	Not in ASAP	Details
geo sc	Single-nucleus and bulk transcriptomic atlas of human visceral adipose tissue... GSE342773 Homo sapiens	—	mtx 318 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of aortic cellular in ApoE-/- mice and MSC_ITGB3-... GSE238011 Mus musculus	—	mtx 319 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::b370ed97-3fcc-4bb5-a7fd-51e720541c96 Homo sapiens	—	h5 320 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::223d6c30-3c8b-5221-84c4-56fb2ca6bbd2 Homo sapiens	—	loom 324 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::d5641c54-aaf2-4616-a6fd-5c6632ce4558 Homo sapiens	—	mtx 325 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 28-year-old black or africa... HBM787.XCSX.733 Homo sapiens	—	h5ad 327 MB	Not in ASAP	Details
geo sc	Multimodal Single-Cell Transcriptomic and Chromatin Accessibility Profiling R... GSE326241 Mus musculus	—	mtx 327 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM967.LPHM.957 Homo sapiens	—	h5ad 328 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM449.JXLG.799 Homo sapiens	—	h5ad 328 MB	Not in ASAP	Details
hca sc	An Atlas of Cells in the Human Tonsil Publication DOI 0cc58d0b-1734-4e1d-9113-b32e52f75e36::cdfb3556-c314-4d2b-ae73-2ac123963a32 Homo sapiens	—	mtx 333 MB	Not in ASAP	Details