External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Re... GSE315482 Mus musculus	—	rds 356 MB	Not in ASAP	Details
hca sc	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-... Publication DOI 8fd1609b-cd2d-4b4d-bb96-49ae6b8ade2f::a6a8af3d-eb71-462d-a316-17f7c021e69d Homo sapiens	—	h5ad 356 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::7bf3a482-a69a-54b4-a99c-ee420a149190 Homo sapiens	—	loom 357 MB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::dd9cc7f7-e8ca-5ade-b792-af028c79b8e3 Homo sapiens	—	loom 357 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM739.ZDLB.526 Homo sapiens	—	h5ad 361 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM975.WQQQ.853 Homo sapiens	—	h5ad 361 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::2b48db34-0ea7-5031-968b-1728e52d7312 Homo sapiens	—	h5ad 363 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white male HBM633.LLDZ.679 Homo sapiens	—	h5ad 364 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::9d98455b-1d64-4593-99b9-9ee447b5224b Homo sapiens	—	h5 364 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of small intestinal organoid self-organization [sc... GSE329635 Mus musculus	—	mtx 364 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::6e5c0f88-48b7-50c9-9ed9-ffaf335a8f11 Homo sapiens	—	loom 364 MB	Not in ASAP	Details
hca sc	Dissecting the clonal nature of allelic expression in somatic cells by single... Publication DOI ccef38d7-aa92-4010-9621-c4c7b1182647::d0e303fb-b679-5968-b814-1ad6c1e6db28 Homo sapiens	—	loom 365 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA sequencing of human subcutaneous adipose tissue biopsies f... GSE302701 Homo sapiens	—	mtx 367 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 65-year-old white male HBM593.CLXN.573 Homo sapiens	—	h5ad 367 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::7b6ce704-e0d9-5ecf-96c5-4974a7e0ae6d Homo sapiens	—	loom 367 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM482.DKQF.747 Homo sapiens	—	h5ad 367 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM634.GHKQ.553 Homo sapiens	—	h5ad 367 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::24a8a323-7ecd-504e-a253-b0e0892dd730 Homo sapiens	—	loom 371 MB	Not in ASAP	Details
geo sc	RORγt⁺ Dendritic Cells Are a Distinct Lymphoid-Derived Lineage [CITE-seq] GSE312479 Mus musculus	—	mtx 373 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM727.DWPV.852 Homo sapiens	—	h5ad 375 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM267.GLTT.762 Homo sapiens	—	h5ad 375 MB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::3a67c735-70af-55c3-a73e-e404c6d506d8 Homo sapiens	—	loom 375 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::f6e1cc31-f921-595b-9d28-b30da4b184da Homo sapiens	—	loom 377 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::a3121534-600d-5453-ba4f-7719aab244c0 Homo sapiens	—	loom 382 MB	Not in ASAP	Details
broad_scp sc	Analysis of human substantia nigra (SN) and mouse bed nucleus of the stria te... SCP466	—	rds 383 MB	Not in ASAP	Details