External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Multi-modal single-cell sequencing reveals network transition in circulating ... GSE295173 Homo sapiens	—	rds 383 MB	Not in ASAP	Details
geo sc	Single cell transcriptome analysis of TIL for gene expression and TCR immunop... GSE304262 Homo sapiens	—	mtx 388 MB	Not in ASAP	Details
hca sc	Single-cell RNA Sequencing of human microglia from post mortem Alzheimers Dis... Publication DOI b51f49b4-0d2e-4cbd-bbd5-04cd171fc2fa::ce140334-41bc-5527-bc83-46145f360631 Homo sapiens	—	loom 391 MB	Not in ASAP	Details
broad_scp sc	Luoma Practice Dataset SCP1818	—	counts_table 393 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::db99e3f9-c31a-53f1-81c0-8add2d242865 Homo sapiens	—	loom 394 MB	Not in ASAP	Details
geo sc	Single cell RNA sequencing of bone marrow cells in patients post allogenic st... GSE293012 Homo sapiens	—	rds 397 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics uncovers human corneal limbal stem cells and thei... Publication DOI 24c654a5-caa5-440a-8f02-582921f2db4a::a0ec14dd-aec7-5c41-a76b-65330ff26d82 Homo sapiens	—	loom 399 MB	Not in ASAP	Details
hca sc	Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI 38449aea-70b5-40db-84b3-1e08f32efe34::f9070fda-aeab-5ede-a11d-8a9f716998e7 Homo sapiens	—	loom 401 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::9178a5a8-dbc2-5dfd-be33-2ac8e6f2fc96 Homo sapiens	—	loom 404 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::316010e4-fdb5-5628-9510-adba0ca80a29 Homo sapiens	—	loom 405 MB	Not in ASAP	Details
broad_scp sc	BAL Immune Cell Landscape in Checkpoint inhibitor pneumonitis SCP3452	—	rds 406 MB	Not in ASAP	Details
broad_scp sc	SM-Omics: An automated platform for high-throughput spatial multi-omics Publication DOI SCP979	—	h5ad 406 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of mouse brain immune cells following peripheral S... GSE311097 Mus musculus	—	rds 409 MB	Not in ASAP	Details
hca sc	Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI 7b947aa2-43a7-4082-afff-222a3e3a4635::5a0ec491-575e-5bb4-9d64-dc452ac91f31 Homo sapiens	—	loom 409 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::30e6964e-df3b-5f93-ae18-b49ba08aea26 Homo sapiens	—	loom 413 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::a0d6a0e6-f6e0-53b9-a0ec-fd1d839e9d34 Homo sapiens	—	loom 413 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA sequencing of human visceral adipose tissue biopsies from ... GSE302599 Homo sapiens	—	mtx 414 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::e72166c5-bdf0-55ac-8788-7f3895520053 Homo sapiens	—	loom 415 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 28-year-old black or africa... HBM528.DMSV.294 Homo sapiens	—	h5ad 415 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::540da332-adc6-46b1-af47-2a80fa96cdad Homo sapiens	—	h5 415 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::c32cbd84-1ebc-4419-b637-e3c6e5e562db Homo sapiens	—	h5 417 MB	Not in ASAP	Details
geo sc	Single-cell RNA analysis of allele-specific MHC expression in macaque PBMC af... GSE329692 Macaca mulatta; Macaca fascicularis	—	rds 420 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::614fe545-24a0-593d-98b6-aaedff4125c5 Homo sapiens	—	loom 420 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::26a80595-17ca-40f2-9599-c0d3470be288 Homo sapiens	—	h5 426 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::ac14ded8-a727-5056-bc7d-64bec10515b5 Homo sapiens	—	loom 428 MB	Not in ASAP	Details