External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
broad_scp sc	Fucosylated haptoglobin promotes inflammation by interacting with Mincle duri... SCP2851	—	rds 431 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old white male HBM539.GJNB.784 Homo sapiens	—	h5ad 431 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old white male HBM974.RQNL.845 Homo sapiens	—	h5ad 431 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::82a17486-f7a4-4564-8ed8-dce934c15965 Homo sapiens	—	h5 436 MB	Not in ASAP	Details
geo sc	Pregnancy induced TRM cells protect against breast cancer [scRNAseq] GSE292733 Mus musculus	—	rds 436 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::5868a553-70d4-451e-af4f-573d90329187 Homo sapiens	—	h5 446 MB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::de0340b9-bf35-5380-ba8a-22b279c7f04f Homo sapiens	—	h5ad 448 MB	Not in ASAP	Details
hca sc	Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI f83165c5-e2ea-4d15-a5cf-33f3550bffde::1239c316-6b4c-5cff-9a93-133d04fce5da Homo sapiens	—	loom 450 MB	Not in ASAP	Details
hca sc	Transcriptomic and clonal characterization of T cells in the human central ne... Publication DOI d3a4ceac-4d66-4984-9704-2570c0647a56::b1c361f3-6cc5-57af-998d-cf274d0d2532 Homo sapiens	—	loom 451 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI 962bd805-eb89-4c54-bad2-008e497d1307::026efd59-a8ca-522a-95c0-74c26e7b5e3c Homo sapiens	—	loom 452 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA sequencing of human visceral adipose tissue biopsies from ... GSE302702 Homo sapiens	—	mtx 452 MB	Not in ASAP	Details
geo sc	A Phospho-Regulatory Switch Governs the Timing of Cortical Development [scRNA] GSE327212 Mus musculus	—	mtx 452 MB	Not in ASAP	Details
hca sc	Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI 7b947aa2-43a7-4082-afff-222a3e3a4635::31cdfd26-353c-50c2-b670-6c96836a41ec Mus musculus	—	loom 459 MB	Not in ASAP	Details
hca sc	High throughput error corrected Nanopore single cell transcriptome sequencing. Publication DOI 0d4b87ea-6e9e-4569-82e4-1343e0e3259f::9a26bdc5-3954-539f-8166-8bd9714bb985 Mus musculus	—	loom 459 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::e693e934-7928-5fc9-bdd1-68549a693a89 Homo sapiens	—	loom 459 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::b6b295e5-2231-44ad-96b9-e302fedf856d Homo sapiens	—	h5 459 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::08e4fc3a-c2f5-480a-8506-16e155c83129 Homo sapiens	—	h5 463 MB	Not in ASAP	Details
hca sc	Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI 87d52a86-bdc7-440c-b84d-170f7dc346d9::7a3e2c17-8fea-51c1-a61d-31cf47dda832 Homo sapiens	—	loom 465 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM456.XDCK.572 Homo sapiens	—	h5ad 466 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM234.VNGB.747 Homo sapiens	—	h5ad 466 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::9833ea5c-82a2-58b8-8ff4-507c6cc7708d Homo sapiens	—	loom 466 MB	Not in ASAP	Details
hca sc	Single-cell RNA-seq of human peripheral blood NKT cells Publication DOI f48e7c39-cc67-4055-9d79-bc437892840c::c0eef276-45cf-5943-a959-f5296409e062 Homo sapiens	—	loom 472 MB	Not in ASAP	Details
hca sc	Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI 04e4292c-f62f-4098-ae9b-fd69ae002a90::0cf3c297-9715-43c9-b8e9-3bfb2c27737f Homo sapiens	—	h5ad 472 MB	Not in ASAP	Details
hca sc	A single cell immune cell atlas of human hematopoietic system cc95ff89-2e68-4a08-a234-480eca21ce79::6e3fe013-4b61-551f-aeda-253e42f52e41 Homo sapiens	—	loom 475 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::b192646e-b5a8-5142-a7e6-fad99b9ec44d Homo sapiens	—	loom 478 MB	Not in ASAP	Details