External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::ac13f939-dbec-5b55-9df0-93a431ee0f21 Homo sapiens	—	loom 567 MB	Not in ASAP	Details
hca sc	Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI 38449aea-70b5-40db-84b3-1e08f32efe34::4704f9d9-865c-5bd4-8146-5ff87cd1a349 Homo sapiens	—	loom 572 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::d56323a6-fe66-57fb-9d91-12f532f32041 Homo sapiens	—	loom 573 MB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::41b5e2e9-1bc9-5152-b390-1ef9d3b8683b Homo sapiens	—	loom 576 MB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::7e43e8b0-5ebf-5938-81b5-0be141997cb3 Homo sapiens	—	loom 577 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::1c3adb09-ef19-5deb-bf50-6b4b1837e788 Homo sapiens	—	loom 577 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::233b9d4d-e507-5527-b80a-40b86c161790 Homo sapiens	—	loom 578 MB	Not in ASAP	Details
hca sc	A single cell immune cell atlas of human hematopoietic system cc95ff89-2e68-4a08-a234-480eca21ce79::29b0fbb9-22b2-5808-9a8c-27777e15903d Homo sapiens	—	loom 578 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::14359000-793a-5fdc-9d39-cbd4d6115259 Homo sapiens	—	loom 578 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::bf80c6aa-1e5a-5801-8f9d-1b7b64b6c81c Homo sapiens	—	loom 580 MB	Not in ASAP	Details
geo sc	Immunosuppressive myeloid signaling and distinct malignant cell states in pan... GSE301075 Homo sapiens	—	rds 583 MB	Not in ASAP	Details
hca sc	Single-cell RNA-seq of human peripheral blood NKT cells Publication DOI f48e7c39-cc67-4055-9d79-bc437892840c::0dc245bc-8e3e-5500-b591-b3b6e4d2ded8 Homo sapiens	—	loom 584 MB	Not in ASAP	Details
hca sc	Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI 38449aea-70b5-40db-84b3-1e08f32efe34::ed4098af-69f3-5d82-8498-89ce9477e335 Homo sapiens	—	loom 585 MB	Not in ASAP	Details
allen_abc sc	Consensus-WMB-Macosko-10X / Macosko-10X-HY (Allen Brain Cell Atlas 20260711) Macosko-10X-HY Mus musculus	—	h5ad 585 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI 962bd805-eb89-4c54-bad2-008e497d1307::10fa4eec-758b-511c-8b85-05b8d51e407a Homo sapiens	—	loom 586 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::d31660ed-8b33-5556-b32a-87b6b9a42515 Homo sapiens	—	loom 587 MB	Not in ASAP	Details
hca sc	Single-cell RNA-seq of human peripheral blood NKT cells Publication DOI f48e7c39-cc67-4055-9d79-bc437892840c::a6b75e35-9adb-5411-9c61-18b714a075e0 Homo sapiens	—	loom 587 MB	Not in ASAP	Details
hca sc	A single cell immune cell atlas of human hematopoietic system cc95ff89-2e68-4a08-a234-480eca21ce79::5deea37b-9d57-52a1-8b88-e4d2f7d4b3ec Homo sapiens	—	loom 587 MB	Not in ASAP	Details
hca sc	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Ce... Publication DOI b4a7d12f-6c2f-40a3-9e35-9756997857e3::ac376e30-1f1f-5f8e-9b99-ea9cb5113619 Mus musculus	—	loom 590 MB	Not in ASAP	Details
hca sc	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Ce... Publication DOI b4a7d12f-6c2f-40a3-9e35-9756997857e3::f3eb756e-ee29-5166-b93d-ba2518c4d6bb Mus musculus	—	loom 591 MB	Not in ASAP	Details
hca sc	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Ce... Publication DOI b4a7d12f-6c2f-40a3-9e35-9756997857e3::0a8d4d4b-cc24-52a0-8740-f749f2fcaa33 Mus musculus	—	loom 594 MB	Not in ASAP	Details
geo sc	scRNAseq of sorted stromal cell compartment from patients with Crohn's disease GSE307632 Homo sapiens	—	h5ad 595 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::a8d2dcf2-de5e-5569-b88e-aa67099b61b4 Homo sapiens	—	loom 597 MB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::91cba5d1-7db0-5a55-8122-8e2024011a5f Homo sapiens	—	loom 599 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI 559bb888-7829-41f2-ace5-2c05c7eb81e9::0264fd26-4f63-5a35-a524-d509e0814309 Homo sapiens	—	loom 600 MB	Not in ASAP	Details