External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::24c483cc-d7f9-56bb-a142-1257f6649d07
Homo sapiens
— loom
895 MB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::6feca1aa-b080-56b2-8aec-a78a4385257f
Homo sapiens
— loom
897 MB
 Not in ASAP Details
geo
sc
Pooled single-cell screening in colorectal cancer identifies transcriptional ...
GSE299651
Homo sapiens
— h5ad
898 MB
 Not in ASAP Details
hca
sc
Single cell profiling of human induced dendritic cells generated by direct re... Publication DOI
116965f3-f094-4769-9d28-ae675c1b569c::ed5e6907-2c66-5eff-a0fc-f7d92b93d727
Homo sapiens
— loom
898 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::cf90b2c4-4f09-5737-a8f4-770070fd847e
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::0653707c-14bc-596f-84b5-f2f9bcea4c8b
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::1b6f2830-4250-5cde-95d5-068dd28fd937
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::7e33e1ac-1c28-5bf3-89d5-53aa3090e5de
Mus musculus
— loom
900 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::bdc39271-11df-5141-92ba-a9cf671634ea
Homo sapiens
— loom
901 MB
 Not in ASAP Details
geo
sc
Transcription factor Etv3 controls the tolerogenic function of dendritic cell...
GSE306777
Mus musculus
— rds
903 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::99330d63-9d66-5d91-9d84-dd518b7f3800
Homo sapiens
— loom
905 MB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::278c4f06-e30e-518e-aa97-53f0b1a53fad
Homo sapiens
— loom
906 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::ea30b0c3-b9c7-560a-9d2a-66f94e748225
Homo sapiens
— loom
906 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::d875e480-6177-5c13-af3d-866fb05ecaf8
Homo sapiens
— loom
908 MB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::1385d164-58e6-5275-bf33-e042afeceede
Homo sapiens
— loom
908 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::b57db653-defd-5f5b-a023-dca39eb1eaa6
Homo sapiens
— loom
910 MB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::2ae90a18-6c0a-5d49-8ea4-a1f9dc3abd85
Homo sapiens
— loom
911 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::565aafff-e413-52eb-8b21-f5ef84a81143
Homo sapiens
— loom
911 MB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::2952991e-135c-537a-a2ad-816b490d49a1
Mus musculus
— loom
912 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::e2167075-0b34-5206-8bdd-82179379a25f
Homo sapiens
— loom
912 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::81b57657-999b-5522-9995-7b1ceac27af6
Homo sapiens
— loom
913 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::2013357c-8b2e-5271-a52b-60821c5633aa
Homo sapiens
— loom
913 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::1f399a67-4dca-5b74-9939-fdc3fe068877
Homo sapiens
— loom
914 MB
 Not in ASAP Details
hca
sc
Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Eryth... Publication DOI
ec6476ee-2949-41f3-947b-8eef41d6d3ac::f0b0d0cb-032f-4877-bcd7-66a506552fec
Homo sapiens
— h5ad
915 MB
 Not in ASAP Details
geo
sc
Single-Nucleus Transcriptomics Reveals Cell Type-Specific Remodeling and Epil...
GSE306031
Mus musculus
— mtx
916 MB
 Not in ASAP Details
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