External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::ec88fc90-c517-51e3-a658-8324adba66e3
Homo sapiens
— loom
968 MB
 Not in ASAP Details
hca
sc
A single-cell survey of the human first-trimester placenta and decidua Publication DOI
1cd1f41f-f81a-486b-a05b-66ec60f81dcf::82178e73-7604-54da-ab2b-ef3ae3a0d184
Homo sapiens
— loom
968 MB
 Not in ASAP Details
hca
sc
A single-cell transcriptome atlas of the adult human retina Publication DOI
8185730f-4113-40d3-9cc3-929271784c2b::5a11ed4f-41d1-53b4-9e62-3c0bbd04b4b0
Homo sapiens
— loom
970 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::7ff34f14-13ab-5b8a-9481-0b2bf41f0104
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::197041df-9a0c-5bad-b7a4-f7363f478187
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::d3ab452e-992e-5190-9246-1bd9c05d33d4
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::871481b7-38f9-5951-b16e-a2727eee3fc3
Homo sapiens
— loom
973 MB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::18c7131a-6f18-50a0-a805-04e0f4e2d7aa
Homo sapiens
— loom
973 MB
 Not in ASAP Details
broad_scp
sc
Tissue architecture dynamics underlying immune development and decline in the...
SCP3197
 — h5ad
974 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::0256190f-aa47-5bd8-bc2c-cc5b0aeab148
Homo sapiens
— loom
976 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::00a5adc5-a7f4-5326-a730-e62da8e1de5b
Homo sapiens
— loom
977 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::b9b38a70-98cc-5675-8f21-2b16c5d847a1
Homo sapiens
— loom
977 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::e846806f-c290-532c-bd25-ec3c4a252399
Homo sapiens
— loom
978 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::2fa258d7-5ff2-5e7a-ae49-12b209f74e33
Homo sapiens
— loom
978 MB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::2cc97090-d38e-5a6a-9ac4-fd7dc7c7964d
Homo sapiens
— loom
978 MB
 Not in ASAP Details
hca
sc
Single-cell survey of human lymphatics unveils marked endothelial cell hetero... Publication DOI
5ee710d7-e2d5-4fe2-818d-15f5e31dae32::e4ec3229-37c3-5ebb-b5a2-33224f2a5ca4
Homo sapiens
— loom
979 MB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::1b3085ab-20c3-5d11-8b99-a4f144d02a1c
Homo sapiens
— loom
979 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::4f61fe4a-0a3d-5cb6-a1a2-55c013431b25
Homo sapiens
— loom
980 MB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::a141b01e-4fd9-547b-9555-7f29c70f5132
Mus musculus
— loom
980 MB
 Not in ASAP Details
hca
sc
Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition. Publication DOI
e5d45579-1f5b-48c3-b568-320d93e7ca72::f31c92be-69d8-5635-bf03-875d8cf0dca8
Mus musculus
— loom
981 MB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::535c2ca6-c7a3-55c0-b53f-f01bd57aeae9
Homo sapiens
— loom
981 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::7a8e04ed-f1cb-54e8-a2ac-bac140c49991
Homo sapiens
— loom
981 MB
 Not in ASAP Details
hca
sc
Single cell profiling of human induced dendritic cells generated by direct re... Publication DOI
116965f3-f094-4769-9d28-ae675c1b569c::98456966-43d1-5fa8-adca-fcaf50f70081
Homo sapiens
— loom
982 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::4d744e04-7dd1-5d89-85a1-1f0d2dc21afb
Homo sapiens
— loom
982 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::c54bc32f-f7c2-5b00-9764-339cf1926233
Homo sapiens
— loom
982 MB
 Not in ASAP Details
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