External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::bc09ef30-b35b-5548-bbd9-cffe292a7747
Homo sapiens
— loom
1.02 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::2053915a-57a9-57ac-89c4-02bdefdf6d92
Homo sapiens
— loom
1.02 GB
 Not in ASAP Details
hca
sc
Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI
e0009214-c0a0-4a7b-96e2-d6a83e966ce0::648db7e7-d251-5b13-b5ca-e08fb7ae0c76
Mus musculus
— loom
1.02 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::bfaf725d-63e9-5c39-a56b-1e0edf3411d1
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
hca
sc
Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI
04e4292c-f62f-4098-ae9b-fd69ae002a90::31452a04-68c5-434e-8c4e-0d8cf4617e2b
Homo sapiens
— h5ad
1.03 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::cbb3ab25-1975-5523-aa81-e391f576cfcf
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::0fb9640d-a335-5e43-94b4-9e6373b81614
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
geo
sc
LCK deficiency in CD8 T cells leads to reduced proliferation and increased ef...
GSE342586
Mus musculus
— rds
1.03 GB
 Not in ASAP Details
hca
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
091cf39b-01bc-42e5-9437-f419a66c8a45::a1d631d5-ab9a-5813-a2ff-0ace850662af
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::47a6d2b8-91a5-51c3-9df3-ac30c79346d2
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::ca86f6ba-dd05-58c1-ad12-f01f9c505ac9
Homo sapiens
— loom
1.03 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::b8150aca-83a2-5cfc-a6b4-325dbe887ffb
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::0f5de639-5e01-512d-9cf2-e79f5b2221d9
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::675466e0-e2a3-56fb-801a-ad5b54d58d70
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
091cf39b-01bc-42e5-9437-f419a66c8a45::94fbdeb1-7cb8-5dd4-aece-8ab49174e6ea
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Transcriptomes of 1,529 individual cells from 88 human preimplantation embryos Publication DOI
03c6fce7-789e-4e78-a27a-664d562bb738::333119c8-fe4c-5bc1-b879-a9494e3a655d
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::10042449-c5f5-5995-b008-345bc4a34c0e
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::b5a41de4-1ad9-575c-b15c-ab996d834dcf
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::24e7439c-8b14-544a-b953-3d649df55e93
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::af4a4327-56d7-5c10-941b-ac0f385b99a2
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::49e80111-c3ae-5c09-b484-18cf66b7c7fd
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::0723c10b-47e8-5f4e-ac1c-af442b8b5ba9
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::bc07a476-14e9-5e4f-841a-17b024328106
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9dc5ce2c-bb8d-5f56-94dc-15764036c802
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI
f8aa201c-4ff1-45a4-890e-840d63459ca2::0cefa538-f967-5080-9d54-e0cbec0f5ed8
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
of 674