External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Single-cell analysis of follicular fluid reveals dysregulation of ovulatory i... GSE313660 Homo sapiens	—	rds 1.06 GB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::c4b2fcbc-8e08-56b7-84dd-8b973f1bcecc Homo sapiens	—	loom 1.06 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::dfe3fc75-b97f-5e08-a959-922e3193c090 Mus musculus	—	loom 1.06 GB	Not in ASAP	Details
geo sc	SnRNA seq revealed astrocytic MAGL-KO rescued cognitive impairments in 5xFAD ... GSE311467 Mus musculus	—	rds 1.06 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::86265908-b050-5da5-9dd5-a4fd46ef795b Homo sapiens	—	loom 1.06 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::90f43364-ca10-5250-84e7-2e130328b223 Homo sapiens	—	loom 1.06 GB	Not in ASAP	Details
hca sc	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI 53c53cd4-8127-4e12-bc7f-8fe1610a715c::da04b249-0d5f-570d-a9f7-49f188da74da Homo sapiens	—	loom 1.06 GB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::ce5ae635-0564-5e24-befd-27806c61a932 Homo sapiens	—	loom 1.06 GB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::3ff61b49-23c4-51be-8874-fe0c251af0f9 Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI 87d52a86-bdc7-440c-b84d-170f7dc346d9::a9ce2866-24de-52bf-9bff-81830a74f5d1 Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::dbab3887-ae81-4299-9061-50f2b3cfbb73 Homo sapiens	—	h5ad 1.07 GB	Not in ASAP	Details
hca sc	Single-cell RNA-seq analysis throughout a 125-day differentiation protocol t... Publication DOI 2043c65a-1cf8-4828-a656-9e247d4e64f1::29e52cc2-14b8-5eb0-b94b-f115327af47e Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::60cf8454-5bc2-5678-b63b-dbb9a07b2344 Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::d549e34f-c8b9-574b-a521-9af6d46b38a9 Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI e0009214-c0a0-4a7b-96e2-d6a83e966ce0::b687c417-8b3c-57a0-b654-1492cef608e7 Mus musculus	—	loom 1.07 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::763dc19a-8b93-5296-adae-acab43b4e73a Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
geo sc	Single-cell map of the healthy human immune system across the lifespan reveal... GSE233321 Homo sapiens	—	h5ad 1.08 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9ec2cbc4-cdb0-52bc-85f8-ec3ccca78656 Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::1a836d55-ac96-53c7-b1c7-6fa5271c0346 Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::90874abd-8f0d-5119-8e70-92df10a76a9f Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI 04e4292c-f62f-4098-ae9b-fd69ae002a90::e3631d75-cace-4d62-a82d-01005cf621fa Homo sapiens	—	h5ad 1.08 GB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of bone marrow celld from patients with paroxysmal... GSE248025 Homo sapiens	—	rds 1.09 GB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::4a5dedbf-84c4-5772-a103-fc1466aa0c86 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::77724428-4a91-57f0-ac8b-957c2b46b11d Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI 962bd805-eb89-4c54-bad2-008e497d1307::fa99116f-2ae2-5b7c-a2f2-099d18f65233 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details