External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Single-cell survey of human lymphatics unveils marked endothelial cell hetero... Publication DOI
5ee710d7-e2d5-4fe2-818d-15f5e31dae32::6724fb66-1ddd-5d0a-9659-22e922e5190a
Homo sapiens
— loom
1.12 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::6215a9d5-d42c-5c2a-ad2c-aa2630975106
Homo sapiens
— loom
1.12 GB
 Not in ASAP Details
hca
sc
Spatially organized multicellular immune hubs in human colorectal cancer Publication DOI
6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd::90ee0f9a-f650-46bb-afa6-ad7368b538ce
Homo sapiens
— h5
1.12 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::892a2ed1-df3d-5395-81ab-7d397fac5f4e
Homo sapiens
— loom
1.12 GB
 Not in ASAP Details
hca
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
091cf39b-01bc-42e5-9437-f419a66c8a45::e81dc618-cac5-5ead-a4fa-7e1e7835e72d
Homo sapiens
— loom
1.12 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::4aab8a93-6b6c-530b-8a64-806d53dceb0d
Homo sapiens
— loom
1.12 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::649610d7-db97-5ab7-a88b-2c4b17aedbef
Homo sapiens
— loom
1.13 GB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::8d9097bb-eb13-5afd-a7c4-4d4eb4d8b4bd
Homo sapiens
— loom
1.13 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::7d0d9872-cdea-5f19-956e-eb47032a512a
Homo sapiens
— loom
1.13 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::80a66ddb-1082-57a0-b006-6996c6d60041
Homo sapiens
— loom
1.13 GB
 Not in ASAP Details
hca
sc
Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI
07073c12-8006-4710-a00b-23abdb814904::756f7336-9adf-5d46-9239-9fb9662f5072
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI
2086eb05-10b9-432b-b7f0-169ccc49d270::e13e6a7f-02ed-5f39-8931-838c41cdbe9b
Mus musculus
— loom
1.14 GB
 Not in ASAP Details
geo
sc
Spatially organizing million callus cells identify the core-network enable to...
GSE293946
Solanum lycopersicum
— rds
1.14 GB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::e796a3e4-cc8b-5e60-82af-29d1c71e06cd
Mus musculus
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::64bf2ea3-4539-5f7b-bce7-537aafed2bda
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::46304807-68a4-56f2-b87f-2054dce372fc
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::140e0684-eafd-5747-aba9-77150bb95bf5
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI
f8aa201c-4ff1-45a4-890e-840d63459ca2::7bf33691-24f0-5594-acac-6e17985625cc
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::a093db16-48f6-524e-b8c1-71d0a09ffa8a
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::72220b9a-024c-5b2d-8e89-e4aa124ede6f
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::c82c0aa2-56a7-5133-89a8-1836ba23ba7e
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::21d6fc12-aaaf-5dd5-bd99-c762c6b3f384
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
geo
sc
Single-nucleus transcriptomic atlas of the mouse medial thalamus
GSE328074
Mus musculus
— rds
1.15 GB
 Not in ASAP Details
hca
sc
Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Diff... Publication DOI
16ed4ad8-7319-46b2-8859-6fe1c1d73a82::b291292f-a1c0-54e7-b7f1-4cc1df6fd11b
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::2fee9eb1-6509-573a-8e15-155e804fcc7d
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
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