External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::eba9c4af-a2f0-5b4a-8f59-37765fe934f7
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f6e45153-5eec-500a-a3ca-5941ab88f9fd
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::60b76872-f4da-5173-bd01-e9ccbb31323b
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9e9e9ef1-6f25-52fb-a38a-fd5161ef56ad
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::03eda0fb-ca71-5ca6-9ec8-8d622f41c0f3
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI
07073c12-8006-4710-a00b-23abdb814904::4899af48-766d-58b7-9433-1ed3d775857e
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
geo
sc
Single-Cell RNA Sequencing of the Human Endometrium in Healthy Controls and P...
GSE333241
Homo sapiens
— rds
1.2 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::f0e1e02d-f878-51bd-a85b-97cefab47e0a
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::d61d867f-d9d2-5029-a7fa-3b15a38f83db
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::ff1ebf02-f05d-5c09-8a6b-822da9fd9434
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::39121e35-d7a2-52ac-a826-529b0329033f
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::098280ef-33f7-5789-9f86-dc2861664652
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::123c86e8-2a38-5290-b57e-6513c7f8da58
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::5a2898c2-7eb6-500d-aafe-99df8d4af5f0
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI
2086eb05-10b9-432b-b7f0-169ccc49d270::51840a6a-c8f8-5c31-95be-185ee99ee970
Mus musculus
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::42f90a82-46c6-5a57-85ac-908a005072e9
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::e51cda41-8edc-5b73-b0ba-268335f9f45b
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::ca707466-c643-54d0-a251-d4314081608b
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI
842605c7-375a-47c5-9e2c-a71c2c00fcad::b2a89fe8-f3ca-58d9-96e6-24421a6adcd7
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
geo
sc
CITE-seq analysis of Mycobacterium tuberculosis infected Irg1- and iNOS-defic...
GSE254926
Mus musculus
— rds
1.21 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::b111fe60-e2e7-528c-84c9-a692cd5115a0
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI
42d4f8d4-5422-4b78-adae-e7c3c2ef511c::77b64848-c98a-57e9-a171-1af09ab70852
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::0f5243bf-d2f4-5fe2-8abf-e003977d8fe9
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::2cf78493-0e03-5cf5-8793-4c6de846d80c
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::f48a24d0-04ed-5c20-b3ba-7b8c45f8e0db
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
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