External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::efbcf473-018b-5c09-91aa-667803d3147a
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::22f349f7-f6b2-5e38-9b41-9643652f3c69
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::4acb06e7-b275-5119-8726-a1ffb194c3ae
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Mapping the developing human immune system across organs Publication DOI
fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a::f3c2716b-8c1d-4871-8806-a666b16306fb
Homo sapiens
— h5ad
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::5a6f7d50-a91b-5f2a-a968-30b3dad17c7f
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::7255bb0a-3ec5-5d1b-b671-3bf61681ac36
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing and spatial transcriptomics decode cell type-sp...
d5c91e92-2e7f-473d-8cf3-ab03bbae21c2::195ad0f2-cdf8-40e0-88f4-dc8688d6b749
Homo sapiens
— h5ad
1.23 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::76850507-bf7e-511f-9e10-291c44f13cad
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::c1eef424-40cb-51f6-a574-755494d44789
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::5108dd39-d3e8-5705-bf88-f7fe0b614b89
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::7da7adf2-3d9e-5735-95ac-0f75ff988096
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::0cfae9a1-58f2-5594-b3f1-000e42b4e47d
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::429e167c-f004-5f17-b1aa-6a51ffa63ada
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::3939b4fe-edae-5a7e-8756-55be7cd0bc70
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
geo
sc
Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [sn...
GSE306263
Mus musculus
— mtx
1.24 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::adcd50e1-8af9-5a8b-90bf-8dce3c7dc301
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::2c11bbe9-5281-5b53-8f47-d56d75fb2899
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::fd4b1609-73de-5cfa-b966-12abcfff9f52
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
geo
sc
Early cAMP signaling orchestrates single-cell synchronicity throughout Dictyo...
GSE305468
Dictyostelium discoideum
— h5ad
1.24 GB
 Not in ASAP Details
hca
sc
Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI
65cbfea5-5c54-4255-a1d0-14549a86a5c1::a6a373b0-431b-481b-9844-0e4c517b7d1f
Homo sapiens
— mtx
1.24 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::70dd7599-30fb-5802-9b1a-506584b801ec
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::e454e08b-d9b5-5f5b-8fe8-f212fc6d0a61
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::61f531af-0cc2-5f69-8b93-bc04f8f29279
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::04b14924-214d-535a-9ff4-acb125baa36f
Homo sapiens
— loom
1.25 GB
 Not in ASAP Details
hca
sc
Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI
2086eb05-10b9-432b-b7f0-169ccc49d270::eb1c14b7-6ed9-51db-893d-2559b48a116e
Mus musculus
— loom
1.25 GB
 Not in ASAP Details
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