External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::804b0cc2-80e3-5b25-bf55-872990d0571c
Homo sapiens
β€” loom
1.25 GB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::38b21b4d-91c4-51a0-a66e-20b14999985e
Homo sapiens
β€” loom
1.25 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::766a05ba-5dcc-5c75-b7b0-5b02e5432a1b
Homo sapiens
β€” loom
1.25 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::1f9bec17-db53-5c20-b964-c59f7325ca16
Homo sapiens
β€” loom
1.25 GB
 Not in ASAP Details
geo
sc
scRNAseq analysis of human bronchial epithelial cell air liquid interface cul...
GSE319472
Homo sapiens
β€” mtx
1.25 GB
 Not in ASAP Details
hca
sc
Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI
2086eb05-10b9-432b-b7f0-169ccc49d270::0a755c88-f7c3-5871-9b11-5d927c50bf01
Mus musculus
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::e7e0f5bd-3062-5c98-9dda-54c68e45a575
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::69eb9549-b91c-5efb-bd46-102c77894999
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::4eeedbbd-b723-5a3a-8b44-c030c63e78bb
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::c3c607d6-a6dd-57cf-b699-20c2564807eb
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::90ac571c-a4aa-546e-a2b6-5e9c5c500f8e
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::c8fe1ff8-6050-5c9f-8e92-ef979fb87e74
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::90b03d88-efe0-5f9d-81fe-9a651537edcc
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::14e2a4a0-cb86-56c1-815d-7f01f2bdc82a
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::12cbd9a7-79dd-591f-aa50-b3bd52fa35c0
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::9376c7d4-2b59-55c2-9984-d99cbd596af2
Homo sapiens
β€” loom
1.26 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9e42a457-2d7d-54c6-b863-d0e49c6eab38
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::72353622-f806-5f03-8332-b90beb4f5994
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::5e4f3c59-1789-54ed-b8b4-3b40b07f9d39
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::0c410012-5563-5e9d-9841-a0232b69d43f
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::8b320348-ed33-5001-96da-c5fcf58ea40e
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
geo
sc
BHLHE40 Orchestrates TL1A-Driven ILC3 Effector Programs and RORγt⁺ APC-Mediat...
GSE325198
Mus musculus
β€” rds
1.27 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::139bca8f-674f-5dc9-953f-9cfbf91f3179
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::fd267b5e-d06f-534d-b840-91ff13562299
Homo sapiens
β€” loom
1.27 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::8314c8b4-2637-5f55-9bea-cfd2aa7f1552
Homo sapiens
β€” h5ad
1.27 GB
 Not in ASAP Details
of 674