External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::526c6b14-a347-59de-8491-51bc57e71fbf
Homo sapiens
— loom
1.27 GB
 Not in ASAP Details
hca
sc
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution Publication DOI
1dddae6e-3753-48af-b20e-fa22abad125d::9eade8a8-b597-4563-aa63-912bf20bfe12
Homo sapiens
— h5ad
1.28 GB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::206841ad-8762-56fb-b4fc-ad4d67c7c841
Mus musculus
— loom
1.28 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::e56f2d76-d82c-5db2-ab73-60db1271f6f8
Homo sapiens
— loom
1.28 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::2e2b7006-ad4b-57a9-9257-6baefdd0da1b
Homo sapiens
— loom
1.28 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::d7febd45-fa22-51d8-bdb6-8f9c60a3fb1c
Homo sapiens
— loom
1.28 GB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI
559bb888-7829-41f2-ace5-2c05c7eb81e9::b5f694e8-74d8-5a8a-9e79-d3c9cfdc0dc4
Homo sapiens
— loom
1.28 GB
 Not in ASAP Details
hca
sc
Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI
42d4f8d4-5422-4b78-adae-e7c3c2ef511c::9b93f52d-d8cf-5283-92f5-a54e5b38a7be
Mus musculus
— loom
1.29 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::14acae64-563e-57de-8a7a-84b2475d9c7c
Homo sapiens
— loom
1.29 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::909a02dc-6fff-56ca-9a04-b766c9adc03e
Homo sapiens
— loom
1.29 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::6e029385-4307-560d-bd3f-3537e134fd53
Homo sapiens
— loom
1.29 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::c9b005fc-cb01-5fac-8a54-809caab875ab
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::933eb5a5-d115-5c0f-aab6-7cf583d9dc94
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::be33fbb4-3cd1-56be-8669-c83e6af82a6c
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::57af775a-1a70-5af0-84c2-3a5bc3e19f2d
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::42bebe3a-c7b8-5e2f-9df0-f86d85734305
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::59da84a7-521f-57cf-b8e7-3f66c876a565
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::c328a34f-2704-5ca7-a5fe-5a2e02c37d80
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::e658379a-25b7-5180-94d3-19b29cc8901b
Homo sapiens
— loom
1.3 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::976af1a7-3005-597d-ba29-169baed61d8f
Homo sapiens
— loom
1.31 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::1a2df59c-ef85-5d61-b68f-0450b40f81d4
Homo sapiens
— loom
1.31 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::81a17617-9013-50b1-bb77-0c989a608280
Homo sapiens
— loom
1.31 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::2cb67367-bdce-5049-88e1-bfc4b5e1b870
Homo sapiens
— loom
1.31 GB
 Not in ASAP Details
geo
sc
Single-nucleus RNA-seq analysis of whole brains from 5xFAD mice with microgli...
GSE331294
Mus musculus
— rds
1.31 GB
 Not in ASAP Details
geo
sc
Unbalanced chromatin binding of Polycomb complexes drives neurodevelopmental ...
GSE286294
Mus musculus
— rds
1.31 GB
 Not in ASAP Details
of 674