External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::05cf19b9-b76c-539b-83d3-2e1b07fc32ac
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::495e1ab1-7126-58f6-b01a-6dbb48e39054
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI
daef3fda-2620-45ae-a3f7-1613814a35bf::233d2db9-9dfc-483c-b441-a57374869c40
Homo sapiens
— h5
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::31658494-9514-5169-84bf-0eb0620557f0
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::749e78db-e5dd-51a9-8a5f-1b015b182e7a
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::7a15aec3-1935-55fa-a225-c17a2a3cdc85
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::301f3a8e-3e7e-5bcc-b941-aa9cf598235d
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f1c86823-a813-55b2-8c0f-468b61f554e6
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::15f4ddbb-7743-58ac-9531-a7126f49f2f8
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::ee54899a-4256-5839-a78b-9021bed73c00
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f69e1c13-98b3-5e96-bfbe-93425aa82010
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::503e9985-3937-5f9f-b488-90e7d6e8778e
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Molecular characterization of foveal versus peripheral human retina by single... Publication DOI
4bec484d-ca7a-47b4-8d48-8830e06ad6db::4712b9b7-ced2-52db-a644-6afef340a561
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::1343e7c7-9807-57c4-9c1f-164e87285309
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::dd9c07da-ad07-549b-a7ff-67b2a9827583
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI
50154d1e-2308-44bf-9608-10c7afaa560b::d48b3db5-ef5a-4018-acf6-35020e221874
Homo sapiens
— h5ad
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::111c2683-e0ab-5704-b51f-7b93e6717415
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
geo
sc
Macrophage–Fibroblast Signaling Network Identified by Single-Cell RNA Sequenc...
GSE320020
Homo sapiens
— rds
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::608ff0ee-d075-59e3-b62a-ca5b523078db
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::56375725-bbdb-5b7a-a0ed-bb2039daef39
Homo sapiens
— loom
1.44 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::1a52943b-f2d4-5589-b8cf-9fc7db49b9a0
Homo sapiens
— loom
1.44 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::85957546-54ee-5c4c-8fef-8520c8fa57e1
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::45579b1b-8c82-594f-8892-2bf2a529639b
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::cec18329-2a87-50b4-bae6-9acee9c517f2
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::36a07b08-6417-53ea-a2ed-baa85343c210
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
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