External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::2694c4fd-8ef7-59ab-b46f-2bbb66e02a07
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::dbde50d2-6912-59a2-82b0-3b4014dc988c
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::82743f6c-b145-516f-b466-5d8096bee7d5
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::0c77dea1-0069-5959-adaa-5356f4b9c551
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::8ad2188f-df5c-53d8-aaca-61b637db4d08
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::d3199c41-ba49-54dc-99c0-87c36f02b3fa
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::22f35510-4035-504c-b9ae-1a4686138374
Homo sapiens
— h5ad
1.46 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::22bf5dd1-7913-59cb-9afb-cc90dea3db6d
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::f2bfa4ff-75e3-5d76-8c62-9f91563c3810
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::ffbcc414-3247-5eb3-a289-a2c7e5dfa560
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9578bd5f-e601-5682-a947-4ebf8e387c7e
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::046eab96-3fd1-525d-a45d-0b54e3d218bf
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::a36f0258-6a94-5984-86ad-a604088c85be
Mus musculus
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::75b8bc38-c515-5433-baae-bba1f2f7bbd2
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::145e2516-2997-5dab-afa4-328b9dd35390
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Transcriptomic and clonal characterization of T cells in the human central ne... Publication DOI
d3a4ceac-4d66-4984-9704-2570c0647a56::07e71e95-e04b-5e75-92c1-2c8d6139f835
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::ae661a8d-3f26-5f52-8d34-689d62d60894
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::dcab57c4-a155-5719-b7f0-e95d49d9008d
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI
842605c7-375a-47c5-9e2c-a71c2c00fcad::aef015d5-2bcf-5f40-9c4e-1e6dadd94406
Homo sapiens
— loom
1.49 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::705361aa-34d4-535a-909f-dbd63c21e42e
Homo sapiens
— loom
1.49 GB
 Not in ASAP Details
hca
sc
An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Si... Publication DOI
0fd8f918-62d6-4b8b-ac35-4c53dd601f71::2ddbda67-afbd-5c14-a8da-569df3fcc246
Homo sapiens
— loom
1.49 GB
 Not in ASAP Details
geo
sc
Cytokine-linked remodeling of the immune microenvironment is a hallmark of tr...
GSE303544
Homo sapiens
— h5ad
1.49 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::035334e5-cf48-54d6-9e13-47df9949efd1
Homo sapiens
— loom
1.49 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::8e95d168-fab5-5b74-8339-359bed71574a
Homo sapiens
— loom
1.49 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::bcf025d5-c6c6-5705-b544-f33b5bad07dc
Homo sapiens
— loom
1.5 GB
 Not in ASAP Details
of 674