External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI
04e4292c-f62f-4098-ae9b-fd69ae002a90::87173a4e-fa4e-4873-bc2c-61728bd956d5
Homo sapiens
— h5ad
1.55 GB
 Not in ASAP Details
hca
sc
A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI
2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::29cfa195-a563-40ba-aa2e-f55df7debcef
Homo sapiens
— h5ad
1.55 GB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::2d5d814c-e67d-504f-85c4-65ffe0c3c7d0
Mus musculus
— loom
1.55 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::4db0b8f2-7135-538e-a361-4f1125712ee9
Homo sapiens
— loom
1.55 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::4df8a8d9-5b7f-5b0a-a2b3-9e6abb1c90d7
Homo sapiens
— loom
1.56 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::fbdede77-a96e-5480-a4e5-2e20275fc0e8
Homo sapiens
— loom
1.56 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::43b39628-0547-5088-b669-299264f1e01a
Homo sapiens
— loom
1.56 GB
 Not in ASAP Details
hca
sc
A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI
842605c7-375a-47c5-9e2c-a71c2c00fcad::49e7d72c-f27f-58f0-aeb1-6912cf1adb7a
Homo sapiens
— loom
1.56 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::08070de7-b655-5e5d-a23a-1975edfd885b
Homo sapiens
— loom
1.57 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9041ad43-e73e-57db-902f-b610c9184163
Homo sapiens
— loom
1.58 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::a64207bc-4dd3-52fb-8295-e5ac255718d1
Homo sapiens
— loom
1.58 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::d73810b3-f199-5ec4-9448-912bc390bdd6
Homo sapiens
— loom
1.58 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::c1e564e5-bd63-5c9a-a826-4d12b27048e7
Homo sapiens
— loom
1.59 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::0aa3a582-3905-5cba-9dd1-d3cf58be18ce
Homo sapiens
— loom
1.59 GB
 Not in ASAP Details
hca
sc
The landscape of immune dysregulation in Crohn's disease revealed through sin... Publication DOI
cae461de-ecbd-482f-a5d4-11d607fc12ba::8ae26bf6-4b1a-4878-9bcd-93572ea59366
Homo sapiens
— mtx
1.59 GB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::45e67da4-d226-5966-8574-0776f80b0d36
Mus musculus
— loom
1.59 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::62b3d88b-dca0-5cb7-b8d9-f9e4165add40
Homo sapiens
— loom
1.59 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::d7ea884a-b136-5c95-892f-33e284ba9b9c
Homo sapiens
— loom
1.59 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::161c673b-3aab-559a-9189-a37e2c2afc14
Homo sapiens
— loom
1.59 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::f7e2195e-486b-5158-b1a6-4e50adefcd2c
Mus musculus
— loom
1.6 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::ed9268e1-bf55-5b56-bc1f-7237befccf86
Homo sapiens
— loom
1.6 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::0bffdc2f-a720-5ee6-af12-1a32829afc73
Homo sapiens
— loom
1.6 GB
 Not in ASAP Details
hca
sc
Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell tr... Publication DOI
90bd6933-40c0-48d4-8d76-778c103bf545::ec0ad12e-9828-54a5-86bf-58a9dbb1e679
Homo sapiens
— loom
1.61 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::738e2d60-b626-57e8-911a-96345f41c105
Homo sapiens
— loom
1.61 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::a5a6d033-de94-515c-a742-68e6e1188c2c
Homo sapiens
— loom
1.61 GB
 Not in ASAP Details
of 674