External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
geo
sc
Rhinolophus sinicus limb embryonic development single cell transcriptome
GSE282269
Mus musculus; Rhinolophus sinicus
— rds
1.68 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::e2019884-2597-5c38-89fd-7c7cab42de5b
Homo sapiens
— loom
1.68 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::de360725-dc35-580f-88a2-a4f1f7a37a26
Homo sapiens
— loom
1.68 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::cbbeeabb-18e8-52bd-896e-af4ed76b1ca7
Homo sapiens
— loom
1.68 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::7845673c-e51f-5a49-bdab-c3c3b80b51eb
Homo sapiens
— loom
1.68 GB
 Not in ASAP Details
geo
sc
Single-Cell Transcriptomic Analysis of Kaposi Sarcoma
GSE337872
Homo sapiens
— h5ad
1.69 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::80971a51-d5f8-51a0-a5c3-bf57de4e8784
Homo sapiens
— loom
1.69 GB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI
559bb888-7829-41f2-ace5-2c05c7eb81e9::248cc735-5e3d-53e1-bd14-57250f0d5022
Homo sapiens
— loom
1.69 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::40a78ee8-19ee-5bc3-b9a8-3c2a42ff9170
Homo sapiens
— loom
1.7 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::84e656b7-3740-5fa9-8f81-9ce9469bdddb
Homo sapiens
— loom
1.7 GB
 Not in ASAP Details
hca
sc
The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Publication DOI
7be05025-9972-493a-856f-3342a8d1b183::ca5b36f7-872c-4e64-be80-720732b61d36
Mus musculus
— mtx
1.7 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::133372ea-5fab-5221-a189-42e6d2a5259c
Homo sapiens
— loom
1.7 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::fa5185cb-e48d-5ab8-90b8-5499c3a725b6
Homo sapiens
— loom
1.7 GB
 Not in ASAP Details
hca
sc
The landscape of immune dysregulation in Crohn's disease revealed through sin... Publication DOI
cae461de-ecbd-482f-a5d4-11d607fc12ba::a5907777-06fe-48ef-99ac-2b6069239813
Homo sapiens
— mtx
1.7 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::cbb508b9-a20b-52a1-bf55-026c692c9fcf
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Integrated analysis of multimodal single-cell data Publication DOI
3ce9ae94-c469-419a-9637-5d138a4e642f::eab0000b-b975-4ba5-9e89-2fd1d983c030
Homo sapiens
— h5ad
1.71 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::0aec0e7a-565d-5003-b6e5-4ebc9d4094a9
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::1df834a1-5cd9-57a5-8369-420940ada901
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::db2b3202-6c64-5af3-99c8-9b10612c720b
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::a5e6f109-9e3e-5bc6-8ad9-7ab89d400b5c
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::5f93918f-312b-5fd6-9ab7-27b3ef3bfe11
Homo sapiens
— loom
1.72 GB
 Not in ASAP Details
hca
sc
A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI
2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::4a5eaac2-15de-4d25-ace7-1ec6e7a40580
Homo sapiens
— h5ad
1.72 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::88be4005-86e5-53bf-a9ba-e154af2fd538
Mus musculus
— loom
1.73 GB
 Not in ASAP Details
broad_scp
sc
A Single Cell Atlas of Ulcerative Colitis Reveals Neutrophil Stromal Circuits... Publication DOI
SCP3755
 — rds
1.74 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::d96a7c48-0734-5d71-99fe-a60d499c6ac2
Homo sapiens
— loom
1.74 GB
 Not in ASAP Details
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