External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI e0009214-c0a0-4a7b-96e2-d6a83e966ce0::f9c29772-40e7-57e4-9f68-e87b7312f8e1 Mus musculus	—	loom 1.74 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::44161f21-d2ff-5c59-a7dc-e536682afc13 Homo sapiens	—	loom 1.74 GB	Not in ASAP	Details
hca sc	Transcriptomic and clonal characterization of T cells in the human central ne... Publication DOI d3a4ceac-4d66-4984-9704-2570c0647a56::865dcf55-ccb4-52be-9dcc-541b92538686 Homo sapiens	—	loom 1.74 GB	Not in ASAP	Details
hca sc	The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI 4e6f083b-5b9a-4393-9890-2a83da8188f1::6d1063e4-eb47-577a-a8d8-7e1b50f01836 Mus musculus	—	loom 1.74 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::4aca7472-67af-52c5-8ea6-fa377e0ce5b1 Homo sapiens	—	loom 1.74 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::30dbb9b8-d3a3-5f04-954c-f437791416b7 Homo sapiens	—	loom 1.75 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::977b4dba-c975-5a81-8c2c-d4f9eaecd3fb Homo sapiens	—	loom 1.76 GB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::77b967d7-6a71-5458-b8a3-9a7150727b56 Homo sapiens	—	loom 1.78 GB	Not in ASAP	Details
hca sc	Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI f83165c5-e2ea-4d15-a5cf-33f3550bffde::a473478b-8e39-5d8f-8f60-ddca055f0496 Homo sapiens	—	loom 1.78 GB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::1ff18c5a-846f-5000-b8c5-889b6328842a Homo sapiens	—	loom 1.79 GB	Not in ASAP	Details
hca sc	A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI 7027adc6-c9c9-46f3-84ee-9badc3a4f53b::3288e8a7-59c4-5777-9ba6-177cfe110ee7 Mus musculus	—	loom 1.79 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::c4e6d0e6-b218-5ada-ae19-dbb8fe36a11c Homo sapiens	—	loom 1.8 GB	Not in ASAP	Details
hca sc	Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of ... Publication DOI cddab57b-6868-4be4-806f-395ed9dd635a::e1ee2b55-7bce-53a0-b0b4-77f1c98f5a1d Homo sapiens	—	loom 1.87 GB	Not in ASAP	Details
geo sc	LIF induced tumor plasticity establishes an immunosuppressive myeloid niche i... GSE322632 Mus musculus	—	rds 1.87 GB	Not in ASAP	Details
hca sc	Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI 4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::76f26275-effe-5c6b-aff8-edfebb0e5566 Homo sapiens	—	loom 1.87 GB	Not in ASAP	Details
geo sc	A single-cell and spatial immune atlas of chronic antibody-mediated rejection... GSE328870 Homo sapiens	—	rds 1.88 GB	Not in ASAP	Details
geo sc	Performance evaluation of Arabidopsis scRNA-seq sample processing strategies GSE300264 Arabidopsis thaliana	—	rds 1.89 GB	Not in ASAP	Details
geo sc	Single cell sequencing of APECED patient and Healthy control peripheral blood... GSE339254 Homo sapiens	—	rds 1.9 GB	Not in ASAP	Details
hca sc	A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI 7027adc6-c9c9-46f3-84ee-9badc3a4f53b::4a50dc51-0a52-5a98-a295-323ca12b8442 Mus musculus	—	loom 1.9 GB	Not in ASAP	Details
hca sc	Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI f83165c5-e2ea-4d15-a5cf-33f3550bffde::0e8af267-4d85-503e-8d0a-a7895da7cf6a Homo sapiens	—	loom 1.91 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / LEC-10X (Allen Brain Cell Atlas 20260711) LEC-10X Homo sapiens	—	h5ad 1.91 GB	Not in ASAP	Details
hca sc	The landscape of immune dysregulation in Crohn's disease revealed through sin... Publication DOI cae461de-ecbd-482f-a5d4-11d607fc12ba::6c7b3f36-b91a-4085-888a-444aca098f27 Homo sapiens	—	mtx 1.93 GB	Not in ASAP	Details
geo sc	Mutant IDH1 blocks neutropoiesis by repressing myeloid progenitor programs [s... GSE330314 Mus musculus	—	rds 1.93 GB	Not in ASAP	Details
hca sc	A single cell immune cell atlas of human hematopoietic system cc95ff89-2e68-4a08-a234-480eca21ce79::eb1b1979-f4d8-5a60-8c01-d1e476d2afd0 Homo sapiens	—	loom 1.95 GB	Not in ASAP	Details
geo sc	Lamins gate nuclear and chromatin structures for cardiomyocyte maturation gen... GSE330100 Mus musculus	—	rds 1.95 GB	Not in ASAP	Details