External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI 04e4292c-f62f-4098-ae9b-fd69ae002a90::89c10433-6588-4d08-b1e4-ea424e043818 Homo sapiens	—	h5ad 2.16 GB	Not in ASAP	Details
geo sc	A tumor-associated photoreceptor signature unifies distinct central nervous s... GSE273440 Mus musculus	—	rds 2.17 GB	Not in ASAP	Details
geo sc	Single-cell transcriptomic profileing of IMR-90 SV40-T cells expressing wild-... GSE308173 Homo sapiens	—	h5ad 2.17 GB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::dcdd19fc-1920-5b53-8266-1609a73eaca0 Homo sapiens	—	loom 2.23 GB	Not in ASAP	Details
geo sc	S100A8/S100A9–toll-like receptor 4 signaling identified using single-cell RNA... GSE275032 Mus musculus	—	h5ad 2.23 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / HIP-10X (Allen Brain Cell Atlas 20260711) HIP-10X Homo sapiens	—	h5ad 2.24 GB	Not in ASAP	Details
geo sc	Targeting branched-chain amino acids alleviates pulmonary fibrosis [scRNA-seq] GSE295427 Mus musculus	—	rds 2.26 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::427fe0a9-ab7d-5f24-86fd-23cbad73dce1 Homo sapiens	—	loom 2.27 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / FI-10X (Allen Brain Cell Atlas 20260711) FI-10X Homo sapiens	—	h5ad 2.31 GB	Not in ASAP	Details
geo sc	Single-cell RNA-seq of E14.5 mouse ventricular tissue from ETS1 endothelial-s... GSE294340 Mus musculus	—	rds 2.31 GB	Not in ASAP	Details
hca sc	Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI 87d52a86-bdc7-440c-b84d-170f7dc346d9::7763a7e8-4d5a-51f8-89bf-2f3a3771664f Homo sapiens	—	loom 2.31 GB	Not in ASAP	Details
hca sc	Single-cell transcriptomics uncovers human corneal limbal stem cells and thei... Publication DOI 24c654a5-caa5-440a-8f02-582921f2db4a::2ad1b9ce-44be-5a82-b533-9a82632496b9 Homo sapiens	—	loom 2.35 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::3decda52-45d8-5b0d-b321-ef5b3250bbf2 Homo sapiens	—	h5ad 2.4 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / AnG-10X (Allen Brain Cell Atlas 20260711) AnG-10X Homo sapiens	—	h5ad 2.4 GB	Not in ASAP	Details
geo sc	Cell autonomous regional differences in oligodendrocyte precursor cell develo... GSE290817 Mus musculus	—	rds 2.41 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::6a12bfca-8a8e-512e-b50f-f88f7d340b31 Homo sapiens	—	loom 2.41 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::4f5cc4a3-3dab-5559-964b-8bc4dcb6dd34 Homo sapiens	—	loom 2.42 GB	Not in ASAP	Details
geo sc	Mouse retina scRNA in Atf4 and Bach1 knock-down GSE314867 Mus musculus	—	rds 2.42 GB	Not in ASAP	Details
geo sc	Glycosylation Orchestrates Megakaryocytic Fate of Hematopoietic Stem Cells vi... GSE264078 Mus musculus	—	rds 2.45 GB	Not in ASAP	Details
hca sc	Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI e0009214-c0a0-4a7b-96e2-d6a83e966ce0::4ac4a3ac-0e61-51df-94fd-fa9fbb3b63b9 Mus musculus	—	loom 2.46 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::b3d7ee24-7134-5f41-80c6-450608a7aa7e Homo sapiens	—	loom 2.47 GB	Not in ASAP	Details
geo sc	Decoding stage-specific symbiotic programs in the Rhizophagus irregularis – t... GSE314252 Solanum lycopersicum	—	rds 2.47 GB	Not in ASAP	Details
geo sc	Integration of in situ hybridization and scRNA-seq data provides a 2D topogra... GSE322831 Gallus gallus; Mus musculus; Homo sapiens	—	h5ad 2.48 GB	Not in ASAP	Details
hca sc	The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI 4e6f083b-5b9a-4393-9890-2a83da8188f1::2c351f1c-9cb7-56bb-bfc9-c7954392a3de Mus musculus	—	loom 2.48 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::eeca3320-f850-52a2-8405-f08844d0f53c Homo sapiens	—	loom 2.49 GB	Not in ASAP	Details