External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Publication DOI 7be05025-9972-493a-856f-3342a8d1b183::03e04fe9-1015-4542-967d-e9c208f4bc1b Mus musculus	—	mtx 11 GB	Not in ASAP	Details
allen_abc sc	WMB-10Xv3 / WMB-10Xv3-STR (Allen Brain Cell Atlas 20260711) WMB-10Xv3-STR Mus musculus	—	h5ad 11.1 GB	Not in ASAP	Details
geo sc	Ubiquitin-like proteins NEDD8 and SUMO2 control epithelial homeostasis, regen... GSE326641 Mus musculus	—	rds 11.2 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / MEC-10X (Allen Brain Cell Atlas 20260711) MEC-10X Homo sapiens	—	h5ad 11.6 GB	Not in ASAP	Details
geo sc	Dlx1&2 Directly Promote Expression of Cxcl14 to Control Synapse Development a... GSE292838 Mus musculus	—	rds 12 GB	Not in ASAP	Details
geo sc	Single cell analysis highlights the significance of malignant cell IFN/MHC-II... GSE301741 Homo sapiens	—	rds 12.4 GB	Not in ASAP	Details
allen_abc sc	WMB-10Xv3 / WMB-10Xv3-MB (Allen Brain Cell Atlas 20260711) WMB-10Xv3-MB Mus musculus	—	h5ad 12.8 GB	Not in ASAP	Details
allen_abc sc	Zeng-Aging-Mouse-10Xv3 / Zeng-Aging-Mouse-10Xv3 (Allen Brain Cell Atlas 20260... Zeng-Aging-Mouse-10Xv3 Mus musculus	—	h5ad 12.9 GB	Not in ASAP	Details
geo sc	Single Cell Transcriptome Signatures of Sarcoidosis in Lung Immune Cell Popul... GSE288459 Homo sapiens	—	rds 13.3 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / MTG-10X (Allen Brain Cell Atlas 20260711) MTG-10X Homo sapiens	—	h5ad 14.1 GB	Not in ASAP	Details
allen_abc sc	ASAP-PMDBS-10X / ASAP-PMDBS-10X (Allen Brain Cell Atlas 20260711) ASAP-PMDBS-10X Homo sapiens	—	h5ad 14.7 GB	Not in ASAP	Details
geo sc	A Polyamine-mediated Posttranslational Modification Required for Macrophage T... GSE312873 Mus musculus	—	rds 16.3 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / DFC-10X (Allen Brain Cell Atlas 20260711) DFC-10X Homo sapiens	—	h5ad 16.5 GB	Not in ASAP	Details
geo sc	Single-cell transcriptomics identifies altered neutrophil dynamics and accent... GSE263903 Mus musculus	—	rds 17.1 GB	Not in ASAP	Details
hca sc	Molecular Architecture of the Mouse Nervous System. Publication DOI 2c041c26-f75a-495f-ab36-a076f89d422a::edab6654-85b7-4eae-b68e-89fda8c9a409 Mus musculus	—	loom 17.8 GB	Not in ASAP	Details
geo sc	Single-cell analysis identifies monocyte signatures of disease activity and c... GSE338165 Homo sapiens	—	rds 18.3 GB	Not in ASAP	Details
geo sc	Multiscale analysis and functional validation of the cellular and genetic det... GSE212817 Mus musculus	—	rds 21.4 GB	Not in ASAP	Details
geo sc	Vascular smooth muscle cell state trajectories mediate molecular mechanisms o... GSE321762 Mus musculus	—	rds 21.9 GB	Not in ASAP	Details
allen_abc sc	WHB-10Xv3 / WHB-10Xv3-Neurons (Allen Brain Cell Atlas 20260711) WHB-10Xv3-Neurons Homo sapiens	—	h5ad 30.6 GB	Not in ASAP	Details
geo sc	Massively multiplex multi-modal chemical screens at single-cell resolution wi... GSE309834 Homo sapiens	—	h5ad 34 GB	Not in ASAP	Details
geo sc	Multiscale analysis and functional validation of the cellular and genetic det... GSE317068 Homo sapiens	—	rds 35.9 GB	Not in ASAP	Details
geo sc	Endometrial Insights: Unmasking Endometriosis through Single-Cell Profiling a... GSE266265 Homo sapiens	—	rds 38.9 GB	Not in ASAP	Details
broad_scp sc	Cross-Species Integration of Single-Cell Basal Ganglia Data Using MultiVIB Publication DOI SCP3768	—	h5ad 117 GB	Not in ASAP	Details
geo sc	Longitudinal single cell RNA-sequencing reveals evolution of micro- and macro... GSE296507 Mus musculus	—	rds 127 GB	Not in ASAP	Details