External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the small intestine of a 54-year-old black or afric... HBM652.TXVL.374 Homo sapiens	—	h5ad 52 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::d9bc037f-604d-4f87-b1a5-94075f9dc577 Homo sapiens	—	h5 52.2 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::3b8f76f3-f4ee-4f86-8a48-0de0fe24740b Homo sapiens	—	h5 52.4 MB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::b077b456-6362-59ea-a5b6-230dd8bc6d91 Mus musculus	—	loom 52.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::b7f58fe2-14d3-4527-acb2-8df03def0a7e Homo sapiens	—	h5 52.7 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341093 Mus musculus	—	rds 52.7 MB	Not in ASAP	Details
geo sc	Single-nucleus multi-omics profiling reveals cell state transitions and epige... GSE304587 Homo sapiens	—	rds 53.3 MB	Not in ASAP	Details
geo sc	Single-cell atlas of rhesus monkey testis reveals aging- and season-dependent... GSE306699 Macaca mulatta	—	mtx 53.4 MB	Not in ASAP	Details
hca sc	Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic ... Publication DOI 425c2759-db66-4c93-a358-a562c069b1f1::539756c7-4e13-4723-941c-783869e28e7d Mus musculus	—	h5 53.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 78-year-old black or afric... HBM285.RPBV.676 Homo sapiens	—	h5ad 53.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 10-year-old white male HBM698.FWFH.998 Homo sapiens	—	h5ad 53.6 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::f2c7de48-8f58-49cf-b437-ec33ca1ade29 Homo sapiens	—	h5ad 53.6 MB	Not in ASAP	Details
geo sc	Inhibition of the Gerozyme 15-Prostaglandin Dehydrogenase Promotes Articular ... GSE308009 Mus musculus	—	h5ad 54 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial a... Publication DOI c1a9a93d-d9de-4e65-9619-a9cec1052eaa::bae63ffd-8307-59fd-a9b7-54c9f0b167ee Homo sapiens	—	loom 54.7 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::d89258a1-23db-43ef-b904-a2868bbc5cbe Homo sapiens	—	h5ad 55.1 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of ovarian CD45+ immune cells from gonadotropin-tr... GSE336281 Mus musculus	—	mtx 55.5 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::6af74aa5-fe31-40a3-b06b-c33368d91e6f Homo sapiens	—	mtx 55.7 MB	Not in ASAP	Details
hca sc	Spatial and single-cell transcriptional profiling identifies functionally dis... Publication DOI 05657a59-9f9d-4bb9-b77b-24be13aa5cea::8f02cde0-e572-5cad-9ec6-bb1278e84283 Homo sapiens	—	loom 55.8 MB	Not in ASAP	Details
hca sc	Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation. Publication DOI 67a3de09-45b9-49c3-a068-ff4665daa50e::feb5f419-da5c-58ac-b866-d5f1fa9e0548 Homo sapiens	—	loom 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 54-year-old white male HBM743.RNWC.765 Homo sapiens	—	h5ad 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 54-year-old white male HBM425.GDJT.648 Homo sapiens	—	h5ad 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old black or african americ... HBM279.SLFX.335 Homo sapiens	—	h5ad 56 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 17-month-old white female HBM355.NTQW.365 Homo sapiens	—	h5ad 56.5 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::512987ef-7841-5b6a-915f-8c9f17e821c4 Homo sapiens	—	mtx 56.5 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::16f6f9cd-fd76-474c-8fb1-b2782088f604 Homo sapiens	—	h5 57 MB	Not in ASAP	Details