External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::173f2201-086d-4120-a83b-a13169a380aa Homo sapiens	—	h5 64.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM745.RQWF.695 Homo sapiens	—	h5ad 64.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 67-year-old white female HBM758.GVSL.783 Homo sapiens	—	h5ad 64.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM963.KZKG.549 Homo sapiens	—	h5ad 65.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM675.RVGB.258 Homo sapiens	—	h5ad 65.4 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::cee3ed0a-36a0-51dc-87f2-f8b1650b7b47 Homo sapiens	—	mtx 65.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM927.FWCN.753 Homo sapiens	—	h5ad 65.7 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::82c0b47c-70e0-4e74-bf18-04047b9e1ed6 Homo sapiens	—	h5 66 MB	Not in ASAP	Details
hca sc	Single-cell omics reveal human mononuclear phagocyte heterogeneity and inflam... Publication DOI ccd1f1ba-74ce-469b-9fc9-f6faea623358::f02fb30a-1f32-50d0-a3d5-95051ffa5899 Homo sapiens	—	loom 66 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 30-year-old white male HBM259.DZXX.383 Homo sapiens	—	h5ad 66 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM839.ZFRD.789 Homo sapiens	—	h5ad 66.1 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::0e1b868b-7330-4b21-a425-2c6140a6ff3f Homo sapiens	—	h5 66.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::07d9a2f4-91e2-476b-b26c-b5c17f4cd533 Homo sapiens	—	h5 66.9 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::29601260-3240-4845-82ed-9ac4a03d268b Homo sapiens	—	mtx 67.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM597.PBJW.593 Homo sapiens	—	h5ad 67.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM874.GLHT.852 Homo sapiens	—	h5ad 67.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::ba9fd8d3-da61-443b-8c0f-1b951a00de6b Homo sapiens	—	h5 67.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::0720c695-2be2-456d-a4b0-ee9606e57881 Homo sapiens	—	h5 67.3 MB	Not in ASAP	Details
geo sc	In vitro PI3Kδ inhibition skews CD8 T cell differentiation towards progenitor... GSE286925 Mus musculus	—	mtx 67.7 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f659d07b-7fa6-49bc-a4ac-dd617b3cbb90 Homo sapiens	—	h5 67.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::65e207f6-8b39-4fcb-a845-95cf72e2183f Homo sapiens	—	h5 68.2 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::5af4e138-19da-5a7e-8819-aded96ef6c3e Homo sapiens	—	loom 68.3 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM675.VBDH.688 Homo sapiens	—	h5ad 68.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM475.CVXD.875 Homo sapiens	—	h5ad 68.7 MB	Not in ASAP	Details
geo sc	Inhibition of NFAT after human uterus transplant promotes loss of tissue-resi... GSE292829 Homo sapiens	—	mtx 68.7 MB	Not in ASAP	Details