External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM887.DDJL.589 Homo sapiens	—	h5ad 68.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM223.JQLM.452 Homo sapiens	—	h5ad 69 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM255.NWHK.947 Homo sapiens	—	h5ad 69.3 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::c448223f-0e7b-5ec3-9f44-dfccade3fbbf Homo sapiens	—	loom 69.4 MB	Not in ASAP	Details
geo sc	High-resolution and noninvasive profiling of the tumor microenvironment with ... GSE320040 Homo sapiens	—	mtx 69.5 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of kidney tissue from a conditional Vhlh knockout ... GSE301372 Mus musculus	—	rds 69.6 MB	Not in ASAP	Details
geo sc	scRNA-sequencing of mouse MASH liver and healthy control GSE307893 Mus musculus	—	mtx 70.2 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::b26b04a5-4451-490b-9dea-042eac3a25dd Homo sapiens	—	h5 70.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM536.FHLK.529 Homo sapiens	—	h5ad 71.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::832cea51-7a81-464e-95c8-8c72317adcf5 Homo sapiens	—	h5 71.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::477f675b-8417-413b-90fa-5020a05b5f82 Homo sapiens	—	h5 71.5 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::df6a4b76-7ea0-49d9-8a1d-fbbdd13a98d8 Homo sapiens	—	mtx 71.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::01a52461-68bf-4a03-86b0-97b473afa0dd Homo sapiens	—	h5 71.8 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::e16e24dc-6450-4e04-8552-a66b5467527f Homo sapiens	—	h5 72.1 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::8adf974b-0e2e-4a77-88bc-927582d53601 Homo sapiens	—	h5 72.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 37-year-old white male HBM949.XCRM.573 Homo sapiens	—	h5ad 72.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::1e1be739-75bd-4c51-aa16-2164b34acf7e Homo sapiens	—	h5 72.5 MB	Not in ASAP	Details
geo sc	The iPSC-derived pulmonary epithilial cells in micro-patterned culture plate ... GSE289846 Homo sapiens	—	mtx 72.5 MB	Not in ASAP	Details
geo sc	Short-read and long-read single-cell sequencing capture distinct perturbation... GSE330222 Homo sapiens	—	rds 72.7 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::18ba43fb-c677-4ba9-a10b-3d82e7a0e3da Homo sapiens	—	h5ad 72.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::6ac64871-8435-4494-9b1e-67e07c408a53 Homo sapiens	—	h5 72.9 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::96984d1c-c2b2-4f9c-9c13-d49b5e2a1ac2 Homo sapiens	—	h5ad 73.7 MB	Not in ASAP	Details
geo sc	The challenges of single cell transcriptomics on difficult human tissue: the ... GSE310326 Homo sapiens	—	mtx 74 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::1c535f6a-c29a-4327-a06c-6de68565adba Homo sapiens	—	mtx 74.3 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341292 Mus musculus	—	rds 74.8 MB	Not in ASAP	Details