External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::870a8d92-ee11-4039-8965-b6a8a67c799a Homo sapiens	—	h5 81.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white male HBM827.VSPC.775 Homo sapiens	—	h5ad 81.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM253.ZBGF.863 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM524.KHPH.599 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM368.JCBG.263 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 40-year-old white female HBM845.SFMK.942 Homo sapiens	—	h5ad 81.8 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::91f902b7-5795-4dbd-9a6f-5104efed5f12 Homo sapiens	—	h5 82.5 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::fbd315f7-fd65-46a4-9b5f-e5cf90fc6a4b Homo sapiens	—	mtx 82.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM244.QJFT.664 Homo sapiens	—	h5ad 82.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM864.CWHJ.963 Homo sapiens	—	h5ad 82.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white male HBM793.RPMP.954 Homo sapiens	—	h5ad 82.7 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::e6b5833d-c987-4c2d-81d2-8e5c8cf368f8 Homo sapiens	—	h5 82.9 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::0e022607-4517-43a4-93c3-8e1c2d94f4a4 Homo sapiens	—	h5ad 84 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::ef60a8b2-5f63-4fd1-8044-298113637ac0 Homo sapiens	—	h5 84.1 MB	Not in ASAP	Details
geo sc	scRNA-seq of wildtype and MZwnt11/slb zebrafish embryos GSE299074 Danio rerio	—	rds 85.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::7a82f972-123c-4f7e-a2d5-733beab4f800 Homo sapiens	—	h5 85.3 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white female HBM985.RCMM.733 Homo sapiens	—	h5ad 85.4 MB	Not in ASAP	Details
broad_scp sc	mikaela SCP2309	—	counts_table 85.8 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::c6069015-ce02-480c-8d99-b0097b329c6c Homo sapiens	—	h5ad 87.9 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::0b69db4f-5772-4c72-99bb-ecba1f4c595b Homo sapiens	—	mtx 88 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM976.MRWH.263 Homo sapiens	—	h5ad 88.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM545.NTKZ.536 Homo sapiens	—	h5ad 88.6 MB	Not in ASAP	Details
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::0131d1e7-af0b-44fc-aeea-2dc987a5e8ba Homo sapiens	—	h5ad 88.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::de6f19b2-e196-46e9-9547-b5918f3119b1 Homo sapiens	—	h5 89.1 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341181 Mus musculus	—	rds 89.4 MB	Not in ASAP	Details