External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Single-cell transcriptomics reveals markers of regulatory T cell dysfunction ... GSE280975 Homo sapiens	—	mtx 98.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::3724e7bd-5588-43c5-a1a6-ab5a6e5de25f Homo sapiens	—	h5 98.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::4a9a6a9a-3cf6-4af6-94cc-dae1f2134a76 Homo sapiens	—	h5 98.9 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::c0ca89e6-04f5-5af9-8096-0bd58e6c89af Homo sapiens	—	loom 99.1 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white male HBM298.XPFQ.827 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM823.CNRW.484 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM745.HTBD.332 Homo sapiens	—	h5ad 99.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 67-year-old white female HBM593.JLCT.283 Homo sapiens	—	h5ad 100 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM892.JLFV.844 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM344.QRJX.878 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM554.DSLR.887 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::5642d2fc-4390-4c96-b933-7a08c62521ec Homo sapiens	—	h5 101 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::c6b21802-eb2a-584b-b5ba-f7678261ea65 Homo sapiens	—	loom 101 MB	Not in ASAP	Details
geo sc	Species-specific oxygen sensing governs the initiation of vertebrate limb reg... GSE292212 Mus musculus; Xenopus laevis	—	mtx 101 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM894.DMKD.525 Homo sapiens	—	h5ad 101 MB	Not in ASAP	Details
geo sc	Single-cell Profiling Reveals Diverse γδ T Cell Subsets in Ulcerative Colitis GSE316069 Homo sapiens	—	mtx 102 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::e55ce6d6-e3e0-493c-9b8b-57dbafebd89e Homo sapiens	—	h5 102 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM894.MXVF.534 Homo sapiens	—	h5ad 103 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 63-year-old white female HBM938.WTSR.492 Homo sapiens	—	h5ad 104 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 63-year-old white female HBM683.HJQF.753 Homo sapiens	—	h5ad 104 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::232d64bd-8b32-593d-8f33-22bedc562d1b Homo sapiens	—	mtx 104 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::55c9ff69-d3a0-45b9-b9ef-d24d06bcc97e Homo sapiens	—	h5 104 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::82f220bf-e386-4745-9721-a12576f81979 Homo sapiens	—	h5 105 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 29-year-old white male HBM674.FLVW.576 Homo sapiens	—	h5ad 105 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 29-year-old white male HBM349.QCWZ.339 Homo sapiens	—	h5ad 105 MB	Not in ASAP	Details