External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9b222457-59c0-5b17-a9e0-fbe891017814 Homo sapiens	—	loom 105 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::20a8c8ae-b997-409f-a89d-d60bd3605eb3 Homo sapiens	—	h5 106 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 30-year-old white male HBM248.VZRB.728 Homo sapiens	—	h5ad 106 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::00327d4e-04c1-4500-9220-b14c4106b114 Homo sapiens	—	h5 106 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::7feedac0-6b43-45fb-9ad4-2538be5a51ce Homo sapiens	—	mtx 106 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::f09d581f-2aeb-5d3f-a0ed-fc703c416459 Mus musculus	—	loom 106 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 67-year-old white female HBM237.TJFZ.599 Homo sapiens	—	h5ad 106 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM265.NQCH.947 Homo sapiens	—	h5ad 107 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM694.NXCN.368 Homo sapiens	—	h5ad 107 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::963908df-a315-4dc0-95d1-3c00d0cd17e5 Homo sapiens	—	h5ad 107 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 54-year-old black or afric... HBM536.BTZP.293 Homo sapiens	—	h5ad 108 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white female HBM348.TWMS.895 Homo sapiens	—	h5ad 108 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::1a5c1fc7-e073-4403-a334-3a7fd3951895 Homo sapiens	—	mtx 108 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::9880cf89-f1d8-4fb1-a605-6017fb5e4540 Homo sapiens	—	h5ad 109 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white male HBM265.PCGD.229 Homo sapiens	—	h5ad 109 MB	Not in ASAP	Details
hca sc	Single cell profiling of human induced dendritic cells generated by direct re... Publication DOI 116965f3-f094-4769-9d28-ae675c1b569c::267d8c8f-7107-5822-a3fa-20f8259fafd5 Homo sapiens	—	loom 111 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM658.VPJK.669 Homo sapiens	—	h5ad 111 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM578.BDBP.672 Homo sapiens	—	h5ad 111 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::ab9b0f3d-2ecd-450b-887b-5446c748a1db Homo sapiens	—	mtx 111 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::e733edfa-c015-4e40-9d80-3db302df62cd Homo sapiens	—	h5 111 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM546.RNHX.756 Homo sapiens	—	h5ad 111 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::12b8bf38-d45e-44bd-b666-c6383ac33429 Homo sapiens	—	mtx 111 MB	Not in ASAP	Details
broad_scp sc	00 SCP2458	—	rds 112 MB	Not in ASAP	Details
hca sc	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI 42d4f8d4-5422-4b78-adae-e7c3c2ef511c::aab8ecf3-2481-5627-8ca2-7578a5ac1b72 Homo sapiens	—	loom 113 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::91754521-1c83-5e84-84b6-f7f8413cda9b Homo sapiens	—	loom 113 MB	Not in ASAP	Details