External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::756b40d4-fcbe-5e01-84b5-8bb59ea57608 Homo sapiens	—	loom 113 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::2607769e-b831-48ea-9343-309f74e5445a Homo sapiens	—	h5 113 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::043801bc-bc7b-4e2c-8b1b-b910753c73da Homo sapiens	—	mtx 114 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::1d9ef5e5-bbd0-4724-a414-0da06bbb99bb Homo sapiens	—	h5 114 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old white male HBM573.JGLL.575 Homo sapiens	—	h5ad 114 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old white male HBM747.TCHW.829 Homo sapiens	—	h5ad 114 MB	Not in ASAP	Details
geo sc	Gene expression profile at single cell level of atrial tissue in atrial fibri... GSE322768 Homo sapiens	—	mtx 114 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 54-year-old black or afric... HBM693.SRHJ.546 Homo sapiens	—	h5ad 116 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white female HBM349.CWPK.258 Homo sapiens	—	h5ad 116 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM734.LFLC.264 Homo sapiens	—	h5ad 116 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM479.GMDK.586 Homo sapiens	—	h5ad 116 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM696.FGSV.776 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 20-year-old unknown male HBM767.CHDG.359 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 54-year-old black or afric... HBM688.GVRR.228 Homo sapiens	—	h5ad 118 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 56-year-old black or african... HBM324.XBMF.465 Homo sapiens	—	h5ad 119 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::c3bc3fd8-5a01-41f5-a265-7a11696cb949 Homo sapiens	—	mtx 120 MB	Not in ASAP	Details
geo sc	RNA sequencing data of leptomeningeal/perivascular CAMs 8 weeks after repopul... GSE295335 Mus musculus	—	rds 120 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old black or africa... HBM752.KZCK.589 Homo sapiens	—	h5ad 120 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::92cee92e-7651-4df5-aa65-ff3dee8fa589 Homo sapiens	—	h5 121 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::bba307b9-b158-439f-94bb-630d1f08530b Homo sapiens	—	mtx 121 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 25-year-old white male HBM262.LMHQ.472 Homo sapiens	—	h5ad 121 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::9074432b-4f62-54c4-bcf5-3bf336dc4624 Homo sapiens	—	loom 121 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::cc7c546b-5e51-42ed-98c5-9c5de07e8e43 Homo sapiens	—	h5 122 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::a1aa1778-e497-5144-8571-c67041a98ee5 Homo sapiens	—	loom 122 MB	Not in ASAP	Details
hca sc	Distinct microbial and immune niches of the human colon Publication DOI 83f5188e-3bf7-4956-9544-cea4f8997756::57d5bbbf-5c27-5c0c-a32f-46ca08a58650 Homo sapiens	—	loom 122 MB	Not in ASAP	Details