External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	scRNAseq Dataset of lungs from WT and Clec1a KO mice following primary or sec... GSE326909 Mus musculus	—	mtx 134 MB	Not in ASAP	Details
broad_scp sc	HCA LungMAP integrated lung dataset SCP1257	—	h5ad 135 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 65-year-old white male HBM699.XBTD.684 Homo sapiens	—	h5ad 136 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::2ba7c90b-0c5b-49ec-896f-16ef1efbabd6 Homo sapiens	—	h5 137 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM265.FQWZ.384 Homo sapiens	—	h5ad 137 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM749.MTJC.865 Homo sapiens	—	h5ad 137 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::62e2316b-7f2b-4f37-ae4c-563ded9194c8 Homo sapiens	—	h5 138 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 67-year-old white male HBM522.FTFK.487 Homo sapiens	—	h5ad 138 MB	Not in ASAP	Details
hca sc	Salivary ZG16B expression loss follows exocrine gland dysfunction related to ... Publication DOI 60109425-a6e6-4be1-a3bc-15de680317d4::5656c52f-d2f2-4102-9ac7-8ddbd520b245 Homo sapiens	—	h5 138 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 75-year-old white female HBM793.JDRF.289 Homo sapiens	—	h5ad 139 MB	Not in ASAP	Details
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::b9c69e01-3312-4911-85d5-087a5f9a9226 Homo sapiens	—	h5ad 139 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::1f27c8a2-fb2c-58d5-b7e2-b0c2d0151591 Homo sapiens	—	loom 139 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::b0318a30-e263-46c6-9996-1369d81fe8c1 Homo sapiens	—	h5 140 MB	Not in ASAP	Details
hca sc	Salivary ZG16B expression loss follows exocrine gland dysfunction related to ... Publication DOI 60109425-a6e6-4be1-a3bc-15de680317d4::cb2f6db2-e6af-4c9b-9e38-39540bbb07fd Homo sapiens	—	h5 141 MB	Not in ASAP	Details
hca sc	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI f8aa201c-4ff1-45a4-890e-840d63459ca2::3d9ba153-6f5b-57de-a917-d59dbee73768 Mus musculus	—	loom 141 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM292.MTQK.563 Homo sapiens	—	h5ad 141 MB	Not in ASAP	Details
hca sc	High throughput error corrected Nanopore single cell transcriptome sequencing. Publication DOI 0d4b87ea-6e9e-4569-82e4-1343e0e3259f::c2cac08f-30ce-59d0-864e-1777a4fbe55d Mus musculus	—	loom 142 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::05168baa-a3de-450a-8543-b138aa51a33c Homo sapiens	—	mtx 142 MB	Not in ASAP	Details
geo sc	Single-cell CITE-seq of peritoneal exudate cells from C57BL/6J mice during ac... GSE335884 Mus musculus	—	mtx 142 MB	Not in ASAP	Details
hca sc	Salivary ZG16B expression loss follows exocrine gland dysfunction related to ... Publication DOI 60109425-a6e6-4be1-a3bc-15de680317d4::6d687455-7bd8-4888-b3a8-a0163e310828 Homo sapiens	—	h5 142 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM745.FJML.722 Homo sapiens	—	h5ad 142 MB	Not in ASAP	Details
hca sc	Salivary ZG16B expression loss follows exocrine gland dysfunction related to ... Publication DOI 60109425-a6e6-4be1-a3bc-15de680317d4::50b45483-d56d-4355-9913-97dadef1eddd Homo sapiens	—	h5 142 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::c6600af8-706d-5962-ae76-6df2a59b16d5 Homo sapiens	—	loom 143 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::a5f462c6-181c-4b8d-83f8-a10000392a69 Homo sapiens	—	mtx 144 MB	Not in ASAP	Details
geo sc	Cohesin-mediated chromatin remodeling controls the differentiation and functi... GSE312960 Mus musculus	—	rds 145 MB	Not in ASAP	Details