External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::8cb19dd0-20d4-4c7b-856d-58929d7804a3 Homo sapiens	—	h5 145 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 30-year-old white male HBM269.LCND.454 Homo sapiens	—	h5ad 145 MB	Not in ASAP	Details
geo sc	Identification of senescent cell subpopulations by CITE-seq analysis GSE250041 Homo sapiens	—	mtx 145 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::cede29c5-7421-538f-a5b2-93125ea59ba5 Homo sapiens	—	loom 146 MB	Not in ASAP	Details
broad_scp sc	Dissecting the dynamic cellular transcriptional atlas of adult teleost testis... SCP2464	—	rds 146 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals the continuum of human lympho-myeloid progenitor... Publication DOI 1ce3b3dc-02f2-44a8-96da-d6d107b27a76::0ae41a0f-fad2-56c5-b843-fa0fc4f5badb Homo sapiens	—	loom 146 MB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::6ce5dc64-bce7-51e5-8721-d0d3ba9f1003 Homo sapiens	—	loom 146 MB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::fc161b16-e615-5669-ba59-460121ff03b2 Homo sapiens	—	loom 148 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 19-year-old unknown male HBM375.THCD.382 Homo sapiens	—	h5ad 148 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM439.BQLR.867 Homo sapiens	—	h5ad 148 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM293.NNSQ.773 Homo sapiens	—	h5ad 148 MB	Not in ASAP	Details
geo sc	scRNA-seq of murine oropharyngeal carcinoma GSE318632 Mus musculus	—	mtx 148 MB	Not in ASAP	Details
geo sc	CITE-Seq analysis of intratumoral immune cells from YUMM1.7 melanoma treated ... GSE292038 Mus musculus	—	mtx 149 MB	Not in ASAP	Details
geo sc	Systematic Benchmarking of Ambient RNA decontamination Tools to Advance Preci... GSE337237 Mus musculus	—	mtx 149 MB	Not in ASAP	Details
hca sc	Single cell sequencing identifies novel sub-populations of breast cancer cell... Publication DOI f6133d2a-9f3d-4ef9-9c19-c23d6c7e6cc0::8b771e65-9a72-5e8c-ad42-3c52831c503e Homo sapiens	—	loom 149 MB	Not in ASAP	Details
geo sc	A beneficial environment promotes immune resilience through epigenetic regula... GSE307573 Mus musculus	—	rds 150 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::54be9d91-5f36-4b93-8809-df1bd49f47e8 Homo sapiens	—	h5ad 151 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::f5da72ac-411d-4513-a009-f3fe4e2f05c0 Homo sapiens	—	h5 151 MB	Not in ASAP	Details
geo sc	Single Cell Glycome and Transcriptome Profiling Enabled by a Library of Anti-... GSE298512 Homo sapiens	—	mtx 151 MB	Not in ASAP	Details
geo sc	Single Cell RNA Sequencing Unveils Distinct Cellular Dynamics in Celiac Disea... GSE315138 Homo sapiens	—	mtx 151 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 20-year-old unknown male HBM575.GRHR.768 Homo sapiens	—	h5ad 152 MB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::32cb8d2e-618c-51ff-92e8-8a3b85ccc05c Homo sapiens	—	loom 154 MB	Not in ASAP	Details
geo sc	Clinical and Single-Cell Sequencing Characteristics of Adult-Onset Intestinal... GSE338463 Homo sapiens	—	mtx 154 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 21-year-old black or african americ... HBM232.MLHJ.832 Homo sapiens	—	h5ad 154 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::cd403303-f270-42e3-86c6-2d0a2e87cff0 Homo sapiens	—	h5ad 155 MB	Not in ASAP	Details