External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::25a055f4-c7f0-4084-bd68-74f1220b945e Homo sapiens	—	mtx 156 MB	Not in ASAP	Details
hca sc	Dissecting the clonal nature of allelic expression in somatic cells by single... Publication DOI ccef38d7-aa92-4010-9621-c4c7b1182647::bb8b075a-f7c3-5b7c-af94-5fba927a2418 Mus musculus	—	loom 157 MB	Not in ASAP	Details
geo sc	Mapping the unicellular transcriptome of the ascending thoracic aorta to chan... GSE334220 Mus musculus	—	mtx 157 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM373.HCFG.722 Homo sapiens	—	h5ad 157 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::3c8866b2-5f6b-4d96-ab40-f921ab276d4b Homo sapiens	—	h5 157 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341293 Mus musculus	—	rds 161 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 24-year-old unknown male HBM856.HVWM.567 Homo sapiens	—	h5ad 162 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::2e159435-1614-4cef-88ea-01b8b048a085 Homo sapiens	—	h5 164 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (left) of a 56-year-old white male HBM695.PDWX.296 Homo sapiens	—	h5ad 164 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the heart of a 61-year-old white male HBM893.JVLB.845 Homo sapiens	—	h5ad 165 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the heart of a 61-year-old white male HBM236.JPVT.769 Homo sapiens	—	h5ad 165 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::b9d26547-42fc-43f2-82f7-f9c590509456 Homo sapiens	—	h5 165 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::d217593b-4ccc-4c2f-b8a0-f1daef3c77f2 Homo sapiens	—	h5 166 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::50f52d62-4333-4eaf-b2bf-903febf0cd59 Homo sapiens	—	mtx 167 MB	Not in ASAP	Details
hca sc	Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Diff... Publication DOI 16ed4ad8-7319-46b2-8859-6fe1c1d73a82::ed15b74e-7c24-5dc1-aada-334ecf4e0560 Homo sapiens	—	loom 167 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 42-year-old black or african ameri... HBM937.DWCD.722 Homo sapiens	—	h5ad 169 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::d35845e0-f724-4a22-9a97-d80ab83e81a0 Homo sapiens	—	h5 169 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in s... Publication DOI 457d0bfe-79e4-43f1-be5d-83bf080d809e::7c9a6971-9be7-4c85-99d5-e4ef524e17cf Homo sapiens	—	h5 169 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::d052bf80-7adc-53ea-affd-68be2363c148 Homo sapiens	—	loom 171 MB	Not in ASAP	Details
broad_scp sc	Pyramidal neurons proportionately alter cortical interneuron subtypes SCP2716	—	h5ad 171 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 24-year-old unknown male HBM247.ZGJR.925 Homo sapiens	—	h5ad 173 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM964.BVWP.737 Homo sapiens	—	h5ad 173 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM689.ZKRJ.585 Homo sapiens	—	h5ad 173 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::4181c704-09ed-4a54-98fa-60e95563e51e Homo sapiens	—	h5ad 174 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM592.RPKF.946 Homo sapiens	—	h5ad 174 MB	Not in ASAP	Details