External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM929.VSJQ.633 Homo sapiens	—	h5ad 174 MB	Not in ASAP	Details
geo sc	A Single-Cell Atlas of Transcriptional and Immunoglobulin Repertoire Evolutio... GSE337533 Homo sapiens	—	mtx 175 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of thioglycollate-elicited peritoneal cells from m... GSE316812 Mus musculus	—	mtx 175 MB	Not in ASAP	Details
hca sc	Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Eryth... Publication DOI ec6476ee-2949-41f3-947b-8eef41d6d3ac::b551db33-f781-4225-83de-13fe9caabdf8 Homo sapiens	—	h5ad 175 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in s... Publication DOI 457d0bfe-79e4-43f1-be5d-83bf080d809e::af943cdb-fb90-4b6f-9032-4f8262bb8b4f Homo sapiens	—	h5 176 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::570e0cdc-d642-4284-a9d3-969b80b930df Homo sapiens	—	mtx 176 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (left) of a 56-year-old white male HBM852.CQCN.957 Homo sapiens	—	h5ad 178 MB	Not in ASAP	Details
geo sc	Pooled CRISPRi screen with scRNA-seq to knockdown 7 transcription factors in ... GSE308682 Homo sapiens	—	mtx 179 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM482.MCCP.264 Homo sapiens	—	h5ad 180 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM322.XJQZ.894 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM236.KSJH.889 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM449.QGGL.994 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM456.GRCM.369 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM475.FWNZ.942 Homo sapiens	—	h5ad 181 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::9b25edd5-662f-48ed-93a2-f1665aa50b2f Homo sapiens	—	mtx 181 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::ce35ff5a-1607-400a-a677-a7fe019dc1a0 Homo sapiens	—	h5 181 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::70966e1a-501f-4fb3-ad58-538ed1d7a92c Homo sapiens	—	h5ad 182 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 31-year-old black or african ... HBM627.CMWM.636 Homo sapiens	—	h5ad 183 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM629.GSHG.922 Homo sapiens	—	h5ad 183 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::a7f9b821-a2e4-49d1-adeb-200f549cb38d Homo sapiens	—	h5 183 MB	Not in ASAP	Details
hca sc	Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI 07073c12-8006-4710-a00b-23abdb814904::d31a421e-2e59-5888-9914-67e1798030a2 Homo sapiens	—	loom 184 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in s... Publication DOI 457d0bfe-79e4-43f1-be5d-83bf080d809e::d676751e-c3d8-4d8e-92b5-4cdc14926bc2 Homo sapiens	—	h5 184 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::6ca2166b-bc1d-51b4-9eb3-6836784b0232 Homo sapiens	—	loom 187 MB	Not in ASAP	Details
geo sc	Microbiome-produced nicotinic acid controls colon regional identity and injur... GSE311538 Mus musculus	—	mtx 187 MB	Not in ASAP	Details
hca sc	Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation. Publication DOI 67a3de09-45b9-49c3-a068-ff4665daa50e::e17ad464-787e-5526-8b5d-f2fcea28cb06 Homo sapiens	—	loom 187 MB	Not in ASAP	Details