External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::a7ce0474-d29c-445e-a4d7-6d0b56ec543d Homo sapiens	—	h5ad 187 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f58f1e35-ec0b-4f68-a32d-e061ff4bba2c Homo sapiens	—	h5 188 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::b965ae8a-2f38-4061-b67e-1ed7699485e6 Homo sapiens	—	h5ad 189 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::6523769c-84e4-5abc-8a66-517a5ebf95e2 Homo sapiens	—	loom 190 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::71680c1e-3fa1-513c-a261-81d09be29b57 Homo sapiens	—	loom 190 MB	Not in ASAP	Details
geo sc	Single-cell RNA-seq of femoral bone cells reveals cellular heterogeneity and ... GSE304165 Mus musculus	—	rds 192 MB	Not in ASAP	Details
broad_scp sc	Computational reconstruction for imaging-free spatial transcriptomics SCP2577	—	h5ad 192 MB	Not in ASAP	Details
geo sc	Gene expression data at the single cell level of human hamstring, deltoid, su... GSE227548 Homo sapiens	—	mtx 193 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::73a2bc0c-ab05-40f4-b596-b7c9f71f543a Homo sapiens	—	h5ad 193 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::b5225c28-9e9f-597b-8016-175ae315eced Homo sapiens	—	loom 194 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::894eb9e5-e6c2-4b2f-9d69-e5e9d0269c32 Homo sapiens	—	h5ad 194 MB	Not in ASAP	Details
geo sc	R-loop landscapes in the developing human brain are linked to neural differen... GSE327314 Homo sapiens	—	mtx 195 MB	Not in ASAP	Details
hca sc	A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI 996120f9-e84f-409f-a01e-732ab58ca8b9::11190ebd-af03-5559-b156-faad3023ea14 Homo sapiens	—	loom 195 MB	Not in ASAP	Details
geo sc	Immunological Differences in Atopic Dermatitis Across Age Groups: Insights fr... GSE332623 Homo sapiens	—	mtx 196 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::00fa7d5e-5686-4b26-a92f-625078d365d2 Homo sapiens	—	h5 196 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::fb9b3006-df88-5e59-a773-ccacffa6724c Homo sapiens	—	mtx 198 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::e40c99fe-9c7c-56b9-b2d9-0f038ed6a3f2 Homo sapiens	—	mtx 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM879.SGNW.944 Homo sapiens	—	h5ad 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 20-year-old white male HBM795.TFHS.265 Homo sapiens	—	h5ad 198 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 59-year-old white female HBM975.MVDK.648 Homo sapiens	—	h5ad 199 MB	Not in ASAP	Details
hca sc	Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition. Publication DOI e5d45579-1f5b-48c3-b568-320d93e7ca72::b3944d37-cdcb-5a6a-bb41-f39e7c657bc3 Mus musculus	—	loom 201 MB	Not in ASAP	Details
geo sc	Pan-cancer single-cell atlas of mouse and human tumor-associated dendritic cells GSE304727 Mus musculus	—	rds 202 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::e4194216-b71c-48cf-b2ec-5a6befa55554 Homo sapiens	—	h5ad 204 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::3bab147f-4df5-5d3f-be16-37a1f5f3f3df Homo sapiens	—	mtx 205 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM437.LCSH.956 Homo sapiens	—	h5ad 205 MB	Not in ASAP	Details