External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 45-year-old white female HBM339.FPMK.994 Homo sapiens	—	h5ad 205 MB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::1a64614d-c95b-55bd-8830-62c6958c564e Homo sapiens	—	loom 207 MB	Not in ASAP	Details
geo sc	Age-dependent CNS responses to Powassan virus infection revealed by single-ce... GSE329199 Mus musculus	—	rds 207 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 49-year-old white male HBM837.KRCD.342 Homo sapiens	—	h5ad 207 MB	Not in ASAP	Details
geo sc	Distinct activation programs in naïve and memory CD8 T cells govern progeny s... GSE341390 Mus musculus	—	rds 207 MB	Not in ASAP	Details
hca sc	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI 42d4f8d4-5422-4b78-adae-e7c3c2ef511c::95356471-fd1c-5a85-86a2-fab70cdbbb2d Mus musculus	—	loom 208 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::eb1ea814-5f55-4a33-ba5e-2f540cad9e82 Homo sapiens	—	h5 208 MB	Not in ASAP	Details
geo sc	Spatiotemporal transcriptomics characterizes immune microenvironment during m... GSE327303 Mus musculus	—	rds 208 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::2f97068d-7e3f-491f-a93b-b1f32e65775b Homo sapiens	—	h5ad 209 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::d65a9976-f431-4cd4-b05a-a3616058f66b Homo sapiens	—	h5ad 209 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::687e213d-a9b8-4bf4-8573-859ea4ee343f Homo sapiens	—	h5 210 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::235d81a6-9131-457f-b9e2-b0dab7c8a76c Homo sapiens	—	h5ad 210 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 31-year-old black or african ... HBM242.JQPW.635 Homo sapiens	—	h5ad 211 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::84e3203f-f3ed-476d-b87e-4860b7df7481 Homo sapiens	—	mtx 212 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::5838f09b-d49d-4230-a3d0-14469b1b7152 Homo sapiens	—	h5ad 212 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 49-year-old white male HBM842.SQSV.255 Homo sapiens	—	h5ad 213 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 37-year-old black or african ameri... HBM326.DMVL.323 Homo sapiens	—	h5ad 213 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM563.FFQJ.764 Homo sapiens	—	h5ad 213 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM869.HBBF.473 Homo sapiens	—	h5ad 213 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::1da89db2-18b0-4164-b54e-dc1f0ff72280 Homo sapiens	—	h5ad 214 MB	Not in ASAP	Details
hca sc	Single-nucleus RNA sequencing and spatial transcriptomics decode cell type-sp... d5c91e92-2e7f-473d-8cf3-ab03bbae21c2::26f830a4-4267-4ce8-ad2d-98bd587f5c6f Homo sapiens	—	h5ad 214 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::38a50df6-70e6-49de-ac64-6454a3c95fa8 Homo sapiens	—	mtx 216 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::0ddae962-997b-4d88-b94b-6608e7719968 Homo sapiens	—	h5ad 216 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::f2153aa4-d785-48bc-b550-c22deb560c1c Homo sapiens	—	h5ad 216 MB	Not in ASAP	Details
hca sc	The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Publication DOI 7be05025-9972-493a-856f-3342a8d1b183::e015e6d4-748c-4980-aede-594d8f8614ec Mus musculus	—	mtx 217 MB	Not in ASAP	Details