External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the lymph node of a 21-year-old black or african am... HBM639.XJJK.393 Homo sapiens	—	h5ad 220 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::9754f007-1d56-4253-ac05-8d9adb2a8200 Homo sapiens	—	mtx 222 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::619a77c6-0160-4e51-833b-efdea1f980cb Homo sapiens	—	mtx 222 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::4a712907-8c07-4f3a-969d-cc4004b7c8da Homo sapiens	—	h5ad 223 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::75f78acd-48fb-4149-9c3b-fe6500b864b9 Homo sapiens	—	h5ad 225 MB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::ac4f7705-00d9-5fd0-b34c-b77d651fabac Homo sapiens	—	loom 225 MB	Not in ASAP	Details
hca sc	Cell type mapping reveals tissue niches and interactions in subcortical multi... 4c8e9d75-d85a-47de-9598-06549cf44b91::4056099f-c287-4b11-8016-83bbdde6d303 Homo sapiens	—	h5ad 225 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::eb4fb303-8d07-54d2-9d11-fb1b01f125f6 Homo sapiens	—	loom 225 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::c550aef4-d6d4-438c-8e92-0d7ddd6370d7 Homo sapiens	—	h5 226 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA Sequencing of Kidney and Brain Samples from Young WT and K... GSE293503 Mus musculus	—	rds 226 MB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::33649243-5635-5d4c-b70e-a1560c27cc82 Homo sapiens	—	h5ad 227 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::a5dc2992-dbe9-44fe-966d-c42cb7ce41b6 Homo sapiens	—	h5 227 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 27-year-old white female HBM528.WLVG.988 Homo sapiens	—	h5ad 228 MB	Not in ASAP	Details
geo sc	Lineage identity governs oncogene dependence in murine NSCLC models of KRAS i... GSE319598 Mus musculus	—	h5ad 228 MB	Not in ASAP	Details
geo sc	Mapping the unicellular transcriptome of the ascending thoracic aorta to chan... GSE334216 Mus musculus	—	mtx 229 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::463ffcc6-163a-4101-91f0-04131dd6e0fc Homo sapiens	—	h5 230 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::fa41283c-c822-45a5-b83e-5669b58fc136 Homo sapiens	—	h5ad 232 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lymph node of a 18-year-old white male HBM675.CLZD.975 Homo sapiens	—	h5ad 233 MB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::815e27f4-56f9-538a-a770-44678b62e71a Homo sapiens	—	loom 234 MB	Not in ASAP	Details
hca sc	Spatially resolved multiomics of human cardiac niches Publication DOI 925f9a4c-cac0-444a-ad2c-612656ab3a85::453d490f-01ae-419f-80a1-d0b12d3c9da1 Homo sapiens	—	h5ad 236 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::b10fd022-8612-510b-a9d2-f62fb4b3b148 Homo sapiens	—	loom 236 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM762.RPDR.282 Homo sapiens	—	h5ad 239 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM282.NSXR.732 Homo sapiens	—	h5ad 239 MB	Not in ASAP	Details
broad_scp sc	Human Kidney Organoids Atlas SCP211	—	counts_table 242 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::cb391af1-e98b-5e27-8d30-c7aa2765e809 Homo sapiens	—	h5ad 243 MB	Not in ASAP	Details