External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Easy-Multiome enables joint profiling of gene expression and chromatin access... GSE338572 Zea mays	—	rds 263 MB	Not in ASAP	Details
geo sc	Sympathetic Neurons Restrain Pancreatic Cancer Lung Metastatic seeding throug... GSE334205 Mus musculus	—	mtx 265 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old white male HBM493.DHZJ.845 Homo sapiens	—	h5ad 265 MB	Not in ASAP	Details
hca sc	Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI 50154d1e-2308-44bf-9608-10c7afaa560b::e08d2b7a-c3c7-4e85-9f31-7835ea482d87 Homo sapiens	—	h5ad 266 MB	Not in ASAP	Details
hca sc	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI f8aa201c-4ff1-45a4-890e-840d63459ca2::5fa57481-d620-5eb3-955f-6f0aea93025b Homo sapiens	—	loom 266 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI 559bb888-7829-41f2-ace5-2c05c7eb81e9::b6eccfda-98dd-5c62-a345-6e4693c29113 Homo sapiens	—	h5 269 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM292.GSZL.269 Homo sapiens	—	h5ad 269 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::2edf9616-d6c1-4124-8397-b9d80b0e8292 Homo sapiens	—	mtx 270 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f2801dfc-aaa2-4789-88a8-c63e2ebb16c2 Homo sapiens	—	h5 271 MB	Not in ASAP	Details
geo sc	Charting Postnatal Heart Development Using In Vivo Single-Cell Functional Gen... GSE290986 Mus musculus	—	mtx 273 MB	Not in ASAP	Details
geo sc	MYCN sustains a progenitor-stage differentiation block in human neuroepitheli... GSE338545 Homo sapiens	—	rds 274 MB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::ec8fcbf6-8556-5820-af81-1d0b346e6038 Homo sapiens	—	loom 276 MB	Not in ASAP	Details
hca sc	Single cell RNA-sequencing of human tonsil Innate lymphoid cells (ILCs) Publication DOI 520afa10-f9d2-4e93-ab7a-26c4c863ce18::6dcc3ab8-784e-5650-b500-16cc12fed239 Homo sapiens	—	loom 280 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::37430547-9289-45c0-ac7e-98382a1e8bab Homo sapiens	—	h5 280 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI 559bb888-7829-41f2-ace5-2c05c7eb81e9::8fbd3d96-dcdf-5c58-b9b5-44b3e0e5db0b Homo sapiens	—	loom 282 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI 65cbfea5-5c54-4255-a1d0-14549a86a5c1::2484e2cc-cbff-42be-9fb8-4c4056c01792 Homo sapiens	—	mtx 284 MB	Not in ASAP	Details
geo sc	Gene expression profile of nociceptors innervating the skin at a single cell ... GSE278171 Mus musculus	—	rds 287 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old white male HBM482.JGJX.834 Homo sapiens	—	h5ad 288 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::687273b5-7d8c-4b5a-8c49-e2441bd83168 Homo sapiens	—	h5 288 MB	Not in ASAP	Details
hca sc	Spatio-temporal immune zonation of the human kidney Publication DOI abe1a013-af7a-45ed-8c26-f3793c24a1f4::1d8a4488-3c4c-52b1-9912-52f08da57022 Homo sapiens	—	loom 288 MB	Not in ASAP	Details
geo sc	A single-cell atlas exposes the transcriptional complexity of algal life cycl... GSE303315 Cylindrotheca closterium	—	rds 290 MB	Not in ASAP	Details
geo sc	Single-cell transcriptional patterns impairment in an adult neurogenesis mode... GSE307094 Homo sapiens	—	mtx 290 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the knee (right) of a 31-year-old black or african ... HBM237.QHSL.933 Homo sapiens	—	h5ad 290 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 66-year-old white male HBM979.VMDC.365 Homo sapiens	—	h5ad 291 MB	Not in ASAP	Details
hca sc	The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Publication DOI 7be05025-9972-493a-856f-3342a8d1b183::74e668ef-f883-48e9-8a3a-31591e3a3e69 Mus musculus	—	mtx 294 MB	Not in ASAP	Details