External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::81462d64-17da-4665-a1f6-aef4c789b96e Homo sapiens	—	h5 341 MB	Not in ASAP	Details
hca sc	Single-nucleus RNA sequencing and spatial transcriptomics decode cell type-sp... d5c91e92-2e7f-473d-8cf3-ab03bbae21c2::e141867b-e4b8-427c-a147-3e336d96ae36 Homo sapiens	—	h5ad 342 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 54-year-old black or africa... HBM363.NTWP.766 Homo sapiens	—	h5ad 344 MB	Not in ASAP	Details
hca sc	A single cell immune cell atlas of human hematopoietic system cc95ff89-2e68-4a08-a234-480eca21ce79::89681d97-514c-573e-a3c5-67ba0278cad8 Homo sapiens	—	loom 347 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::4ba78b8f-af81-5661-8d89-2c9d9c05262a Homo sapiens	—	loom 348 MB	Not in ASAP	Details
geo sc	BRD8 is a therapeutic vulnerability for overcoming resistance to dual ER/HER2... GSE230327 Homo sapiens	—	mtx 349 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::af0efa61-7762-508e-85a6-bdac36c0518b Homo sapiens	—	loom 351 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells... Publication DOI e8808cc8-4ca0-4096-80f2-bba73600cba6::9fa91bb1-b6cc-5ede-91f9-2fb34cd4b939 Mus musculus	—	loom 352 MB	Not in ASAP	Details
geo sc	The CARM1 Epigenetic Enzyme Inhibits Cross-presenting Dendritic Cell Function... GSE300017 Mus musculus	—	rds 353 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::87b35610-a657-539c-b4d9-74d66792c630 Homo sapiens	—	loom 354 MB	Not in ASAP	Details
geo sc	Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Re... GSE315482 Mus musculus	—	rds 356 MB	Not in ASAP	Details
hca sc	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-... Publication DOI 8fd1609b-cd2d-4b4d-bb96-49ae6b8ade2f::a6a8af3d-eb71-462d-a316-17f7c021e69d Homo sapiens	—	h5ad 356 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::7bf3a482-a69a-54b4-a99c-ee420a149190 Homo sapiens	—	loom 357 MB	Not in ASAP	Details
hca sc	Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI 88ec040b-8705-4f77-8f41-f81e57632f7d::dd9cc7f7-e8ca-5ade-b792-af028c79b8e3 Homo sapiens	—	loom 357 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM739.ZDLB.526 Homo sapiens	—	h5ad 361 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM975.WQQQ.853 Homo sapiens	—	h5ad 361 MB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::2b48db34-0ea7-5031-968b-1728e52d7312 Homo sapiens	—	h5ad 363 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white male HBM633.LLDZ.679 Homo sapiens	—	h5ad 364 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::9d98455b-1d64-4593-99b9-9ee447b5224b Homo sapiens	—	h5 364 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of small intestinal organoid self-organization [sc... GSE329635 Mus musculus	—	mtx 364 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::6e5c0f88-48b7-50c9-9ed9-ffaf335a8f11 Homo sapiens	—	loom 364 MB	Not in ASAP	Details
hca sc	Dissecting the clonal nature of allelic expression in somatic cells by single... Publication DOI ccef38d7-aa92-4010-9621-c4c7b1182647::d0e303fb-b679-5968-b814-1ad6c1e6db28 Homo sapiens	—	loom 365 MB	Not in ASAP	Details
geo sc	Single-nucleus RNA sequencing of human subcutaneous adipose tissue biopsies f... GSE302701 Homo sapiens	—	mtx 367 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 65-year-old white male HBM593.CLXN.573 Homo sapiens	—	h5ad 367 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::7b6ce704-e0d9-5ecf-96c5-4974a7e0ae6d Homo sapiens	—	loom 367 MB	Not in ASAP	Details