External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::ee895256-3af5-5222-8469-ed5e3cc3b884
Homo sapiens
— loom
810 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::9c9fb6fc-bd31-5917-ac61-15fe3f06c3cb
Homo sapiens
— loom
813 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::82dd5468-9d20-5031-8ba2-5382c3fc03fe
Homo sapiens
— loom
814 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::20366d41-0d27-5048-9557-40d2e5c49eda
Homo sapiens
— loom
815 MB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::686197b0-5034-5777-95db-793155cec4c7
Homo sapiens
— loom
815 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::0c20e82a-7e94-5f0d-ae43-6fb4a639a7ab
Homo sapiens
— loom
815 MB
 Not in ASAP Details
hca
sc
A single cell immune cell atlas of human hematopoietic system
cc95ff89-2e68-4a08-a234-480eca21ce79::4cc36a35-50b0-5213-824e-b70625503edc
Homo sapiens
— loom
817 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::b5d360e2-398a-5a19-af27-e4ebaccd1173
Homo sapiens
— loom
819 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::0fe31453-c907-5cd1-baf3-27c5e8865522
Homo sapiens
— loom
819 MB
 Not in ASAP Details
hca
sc
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution Publication DOI
1dddae6e-3753-48af-b20e-fa22abad125d::b3ba173d-5718-4b51-9f44-298dd5ddcd40
Homo sapiens
— h5ad
820 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::e35a70fb-ac70-53a1-975f-08477ab13c68
Homo sapiens
— loom
821 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::69584ece-94d9-5d49-92d7-4d0a1fef3513
Homo sapiens
— loom
822 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::1726aa1b-f7db-5445-9918-c9d8bed21753
Homo sapiens
— loom
823 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-seq reveals heterogeneity within human pre-cDCs Publication DOI
05be4f37-4506-429b-b112-506444507d62::43104b26-6f1f-5b14-8f6e-458d5ab05ea4
Homo sapiens
— loom
825 MB
 Not in ASAP Details
broad_scp
sc
Anesthesia-Induced Neurotoxicity: A Cross-Species Comparison in Aged Mice and...
SCP3232
 — rds
825 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::2e3c7dee-4316-513d-b5e5-4fff9f3e4b0f
Homo sapiens
— loom
825 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::9cc65a14-722a-508b-a26f-08afe97a820f
Homo sapiens
— loom
825 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::71fbc320-5072-546b-ab10-906ff82d5578
Homo sapiens
— loom
826 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::069874b2-4f61-5fe8-b0c9-e84e412845f6
Homo sapiens
— loom
826 MB
 Not in ASAP Details
hca
sc
A single cell immune cell atlas of human hematopoietic system
cc95ff89-2e68-4a08-a234-480eca21ce79::81dc1319-3b14-5292-9bb4-900b8d13b8b9
Homo sapiens
— loom
827 MB
 Not in ASAP Details
hca
sc
A single cell immune cell atlas of human hematopoietic system
cc95ff89-2e68-4a08-a234-480eca21ce79::db8681ad-8ce3-5118-947d-938eb9565f99
Homo sapiens
— loom
828 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::2485568a-cdda-59c4-bbdf-3d477ea8fcb0
Homo sapiens
— loom
829 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::bdbc8cdf-6242-5fb8-9aea-015fb9bb355d
Homo sapiens
— loom
832 MB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::6a31a30c-c736-5594-b91e-c7969de91519
Mus musculus
— loom
833 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::467cb52d-2ddb-5f48-bba0-9f68f0ce41dc
Homo sapiens
— loom
834 MB
 Not in ASAP Details
of 756