External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::72b89ac4-66bb-54bf-9c1d-521e3c254e1b
Homo sapiens
— loom
836 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::1aff0189-15bd-5565-a8ef-93ba2fbf473c
Homo sapiens
— loom
837 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::0188105b-f23b-55d7-bc2a-e022227562a7
Homo sapiens
— loom
837 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::33957699-8046-5406-8498-9f9275420887
Homo sapiens
— loom
837 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::56d8d12d-bff8-5d47-9afe-42ffbbbabfa4
Homo sapiens
— loom
838 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::2386c09b-84ad-5cdb-a3cb-1f3530b002b1
Homo sapiens
— loom
838 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::73b9dd2c-8d31-5ed9-95fd-f453f4bace0c
Homo sapiens
— loom
839 MB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::4b6deb9e-35fc-527b-b6e9-65476fd859bb
Homo sapiens
— loom
839 MB
 Not in ASAP Details
geo
sc
snRNAseq molecular characterization of pig dorsal root ganglion neurons [snRN...
GSE263320
Sus scrofa
— rds
841 MB
 Not in ASAP Details
hca
sc
Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI
38449aea-70b5-40db-84b3-1e08f32efe34::020eadc7-0a13-5829-bc4a-9a98f8802164
Homo sapiens
— loom
841 MB
 Not in ASAP Details
hca
sc
Single-cell survey of human lymphatics unveils marked endothelial cell hetero... Publication DOI
5ee710d7-e2d5-4fe2-818d-15f5e31dae32::0c9ebeca-6d69-5bf2-8dec-1b148571f48d
Homo sapiens
— loom
841 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::31c73c50-8434-5471-ba49-16d49041f6e2
Homo sapiens
— loom
842 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::254f71d5-e489-5366-94d1-0e19e7d989d0
Homo sapiens
— loom
843 MB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial a... Publication DOI
c1a9a93d-d9de-4e65-9619-a9cec1052eaa::82bcd98c-335b-550b-840c-e2af3428b2b7
Homo sapiens
— loom
847 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::959b5a6b-862c-5e5d-9dcf-e24bdfe3d98e
Homo sapiens
— loom
847 MB
 Not in ASAP Details
hca
sc
Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI
38449aea-70b5-40db-84b3-1e08f32efe34::c00e6fef-6816-5829-8cbd-c77bdfcf8819
Homo sapiens
— loom
847 MB
 Not in ASAP Details
hca
sc
Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI
38449aea-70b5-40db-84b3-1e08f32efe34::b0287394-d103-5fd9-a8f0-7a8801d83cb1
Homo sapiens
— loom
848 MB
 Not in ASAP Details
hca
sc
Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI
88ec040b-8705-4f77-8f41-f81e57632f7d::0cb612d8-fd22-50e2-8233-0b23555e1446
Mus musculus
— loom
848 MB
 Not in ASAP Details
hca
sc
Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI
38449aea-70b5-40db-84b3-1e08f32efe34::ef9fd78f-b950-5080-a83c-b22c09ebc4f9
Homo sapiens
— loom
849 MB
 Not in ASAP Details
geo
sc
Spatial and Functional Specialization of Human Splenic Innate Lymphoid Cells ...
GSE293758
Homo sapiens
— rds
851 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::9a55c497-c505-50af-9f8e-98f73079e141
Homo sapiens
— loom
852 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::a1d0cf3c-beb0-550d-bef5-5c9f80b1beda
Homo sapiens
— loom
854 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::0e4ce7f8-03e6-5449-9a2e-d53451c70490
Homo sapiens
— loom
856 MB
 Not in ASAP Details
hca
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
091cf39b-01bc-42e5-9437-f419a66c8a45::a5d8f2b9-e36c-50bc-ad61-84c03896193f
Homo sapiens
— loom
856 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::3a07b15c-23a2-58e1-9821-504d0c874e4a
Homo sapiens
— loom
857 MB
 Not in ASAP Details
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