External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::3c69a742-fd1f-56c0-afa3-04611823a210
Homo sapiens
— loom
888 MB
 Not in ASAP Details
hca
sc
Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI
88ec040b-8705-4f77-8f41-f81e57632f7d::e9e38cc2-8323-5b48-a837-8372a09ae311
Homo sapiens
— loom
888 MB
 Not in ASAP Details
geo
sc
Dissecting the cellular architecture of breast cancer brain metastases reveal...
GSE324453
Homo sapiens
— rds
889 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::9b85639f-8afb-52e7-a4a2-d7f0ac983b46
Homo sapiens
— loom
890 MB
 Not in ASAP Details
hca
sc
Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI
962bd805-eb89-4c54-bad2-008e497d1307::dd9788d6-fc82-51eb-a00c-a5230fab0db1
Homo sapiens
— loom
891 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::787a3c0b-5d70-59da-8e9f-af81b6311bd4
Homo sapiens
— loom
892 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::c5b4ccde-0758-571e-beac-4896ce2083a8
Homo sapiens
— loom
893 MB
 Not in ASAP Details
hca
sc
Altered human oligodendrocyte heterogeneity in multiple sclerosis Publication DOI
38449aea-70b5-40db-84b3-1e08f32efe34::0a14f16b-0e4c-510d-a69f-31e1d98d4204
Homo sapiens
— loom
893 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::e6ff0eb9-25c8-51e4-9bf7-49c43a7990cc
Homo sapiens
— loom
895 MB
 Not in ASAP Details
hca
sc
Mapping the developing human immune system across organs Publication DOI
fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a::05f5f498-a210-4faa-8ca1-0e1cd1015be8
Homo sapiens
— h5ad
895 MB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::24c483cc-d7f9-56bb-a142-1257f6649d07
Homo sapiens
— loom
895 MB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::6feca1aa-b080-56b2-8aec-a78a4385257f
Homo sapiens
— loom
897 MB
 Not in ASAP Details
geo
sc
Pooled single-cell screening in colorectal cancer identifies transcriptional ...
GSE299651
Homo sapiens
— h5ad
898 MB
 Not in ASAP Details
hca
sc
Single cell profiling of human induced dendritic cells generated by direct re... Publication DOI
116965f3-f094-4769-9d28-ae675c1b569c::ed5e6907-2c66-5eff-a0fc-f7d92b93d727
Homo sapiens
— loom
898 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::cf90b2c4-4f09-5737-a8f4-770070fd847e
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::0653707c-14bc-596f-84b5-f2f9bcea4c8b
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::1b6f2830-4250-5cde-95d5-068dd28fd937
Homo sapiens
— loom
899 MB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::7e33e1ac-1c28-5bf3-89d5-53aa3090e5de
Mus musculus
— loom
900 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::bdc39271-11df-5141-92ba-a9cf671634ea
Homo sapiens
— loom
901 MB
 Not in ASAP Details
geo
sc
Transcription factor Etv3 controls the tolerogenic function of dendritic cell...
GSE306777
Mus musculus
— rds
903 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::99330d63-9d66-5d91-9d84-dd518b7f3800
Homo sapiens
— loom
905 MB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::278c4f06-e30e-518e-aa97-53f0b1a53fad
Homo sapiens
— loom
906 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::ea30b0c3-b9c7-560a-9d2a-66f94e748225
Homo sapiens
— loom
906 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::d875e480-6177-5c13-af3d-866fb05ecaf8
Homo sapiens
— loom
908 MB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::1385d164-58e6-5275-bf33-e042afeceede
Homo sapiens
— loom
908 MB
 Not in ASAP Details
of 756