External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::b57db653-defd-5f5b-a023-dca39eb1eaa6
Homo sapiens
— loom
910 MB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::2ae90a18-6c0a-5d49-8ea4-a1f9dc3abd85
Homo sapiens
— loom
911 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::565aafff-e413-52eb-8b21-f5ef84a81143
Homo sapiens
— loom
911 MB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::2952991e-135c-537a-a2ad-816b490d49a1
Mus musculus
— loom
912 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::e2167075-0b34-5206-8bdd-82179379a25f
Homo sapiens
— loom
912 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::81b57657-999b-5522-9995-7b1ceac27af6
Homo sapiens
— loom
913 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::2013357c-8b2e-5271-a52b-60821c5633aa
Homo sapiens
— loom
913 MB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::1f399a67-4dca-5b74-9939-fdc3fe068877
Homo sapiens
— loom
914 MB
 Not in ASAP Details
hca
sc
Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Eryth... Publication DOI
ec6476ee-2949-41f3-947b-8eef41d6d3ac::f0b0d0cb-032f-4877-bcd7-66a506552fec
Homo sapiens
— h5ad
915 MB
 Not in ASAP Details
geo
sc
Single-Nucleus Transcriptomics Reveals Cell Type-Specific Remodeling and Epil...
GSE306031
Mus musculus
— mtx
916 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::0eb3a0f6-6b23-5336-b205-27c443d26f34
Homo sapiens
— loom
918 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::677bcd4c-b135-5fb6-be37-7ece51f1ed7a
Homo sapiens
— loom
918 MB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::e1c56e31-945e-5776-8d9a-febbd372c497
Homo sapiens
— loom
919 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::56497373-ec09-51ba-b4b4-92f039431fe1
Homo sapiens
— loom
920 MB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::2e38fbc5-28e9-5f36-8e33-c1b5cdaaaf9f
Homo sapiens
— loom
920 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::2d9333f9-79a3-509e-87f7-c731068d4a57
Homo sapiens
— loom
920 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::250094a1-ba88-5489-af0e-30c214e9dbc4
Homo sapiens
— loom
921 MB
 Not in ASAP Details
hca
sc
GM-CSF-producing T helper cells: a distinct subset of T helper cells. Publication DOI
41fb1734-a121-4616-95c7-3b732c9433c7::46c92155-599b-5195-97df-48ee0656e30d
Homo sapiens
— loom
922 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::2d0d98e8-64bb-5c85-86fd-99de1812a59e
Homo sapiens
— loom
924 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::283fc481-84e2-5977-94f5-8e756041d2f7
Homo sapiens
— loom
925 MB
 Not in ASAP Details
hca
sc
An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Si... Publication DOI
0fd8f918-62d6-4b8b-ac35-4c53dd601f71::b9956f48-c434-5f5f-925c-2f3f394466f8
Homo sapiens
— loom
926 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::97e3104c-07fa-5a98-93b0-c115852aa67e
Homo sapiens
— loom
927 MB
 Not in ASAP Details
hca
sc
A single-cell transcriptome atlas of the adult human retina Publication DOI
8185730f-4113-40d3-9cc3-929271784c2b::bdd02a5f-2007-56f9-abeb-8c2c5c99a08e
Homo sapiens
— loom
928 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::a5bd804d-9a57-5058-85d7-e7f8ec0359f2
Homo sapiens
— loom
928 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::1f26779e-34c1-5d8b-af17-b33e66b1a7de
Homo sapiens
— loom
929 MB
 Not in ASAP Details
of 756