External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::71bdb86d-5ea4-5dfb-a717-7294d0ba49b9
Homo sapiens
— loom
959 MB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::ec23d98f-3dc5-5a08-b793-a6d70ec46080
Homo sapiens
— loom
960 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::6b29de13-50ee-563a-a147-5edf04dabd05
Homo sapiens
— loom
961 MB
 Not in ASAP Details
hca
sc
Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI
455b46e6-d8ea-4611-861e-de720a562ada::8cacd8e1-57cb-5a5e-9c3b-855113d8762a
Homo sapiens
— loom
962 MB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::fe6622fe-2dba-5b44-8965-589be89a91aa
Homo sapiens
— loom
964 MB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::a64cdd04-6d28-5f81-9f2d-4ae6989e9ddc
Homo sapiens
— loom
964 MB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::2fec7ed1-da29-5752-a1a4-c243bdd0e62c
Mus musculus
— loom
965 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::8d774e43-edd6-5bba-b831-1934abb84ede
Homo sapiens
— loom
965 MB
 Not in ASAP Details
hca
sc
Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangiol... Publication DOI
65cbfea5-5c54-4255-a1d0-14549a86a5c1::ca6a85f0-afd9-45e6-8ff1-dcc44bfa3d40
Homo sapiens
— mtx
965 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::3fe151f5-4103-5483-a9d1-1c03d3258ac1
Homo sapiens
— loom
966 MB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::ec88fc90-c517-51e3-a658-8324adba66e3
Homo sapiens
— loom
968 MB
 Not in ASAP Details
hca
sc
A single-cell survey of the human first-trimester placenta and decidua Publication DOI
1cd1f41f-f81a-486b-a05b-66ec60f81dcf::82178e73-7604-54da-ab2b-ef3ae3a0d184
Homo sapiens
— loom
968 MB
 Not in ASAP Details
hca
sc
A single-cell transcriptome atlas of the adult human retina Publication DOI
8185730f-4113-40d3-9cc3-929271784c2b::5a11ed4f-41d1-53b4-9e62-3c0bbd04b4b0
Homo sapiens
— loom
970 MB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::7ff34f14-13ab-5b8a-9481-0b2bf41f0104
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::197041df-9a0c-5bad-b7a4-f7363f478187
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::d3ab452e-992e-5190-9246-1bd9c05d33d4
Homo sapiens
— loom
972 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::871481b7-38f9-5951-b16e-a2727eee3fc3
Homo sapiens
— loom
973 MB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::18c7131a-6f18-50a0-a805-04e0f4e2d7aa
Homo sapiens
— loom
973 MB
 Not in ASAP Details
broad_scp
sc
Tissue architecture dynamics underlying immune development and decline in the...
SCP3197
 — h5ad
974 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::0256190f-aa47-5bd8-bc2c-cc5b0aeab148
Homo sapiens
— loom
976 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::00a5adc5-a7f4-5326-a730-e62da8e1de5b
Homo sapiens
— loom
977 MB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::b9b38a70-98cc-5675-8f21-2b16c5d847a1
Homo sapiens
— loom
977 MB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::e846806f-c290-532c-bd25-ec3c4a252399
Homo sapiens
— loom
978 MB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::2fa258d7-5ff2-5e7a-ae49-12b209f74e33
Homo sapiens
— loom
978 MB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::2cc97090-d38e-5a6a-9ac4-fd7dc7c7964d
Homo sapiens
— loom
978 MB
 Not in ASAP Details
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